Literature DB >> 21478900

Termination and antitermination: RNA polymerase runs a stop sign.

Thomas J Santangelo1, Irina Artsimovitch.   

Abstract

Termination signals induce rapid and irreversible dissociation of the nascent transcript from RNA polymerase. Terminators at the end of genes prevent unintended transcription into the downstream genes, whereas terminators in the upstream regulatory leader regions adjust expression of the structural genes in response to metabolic and environmental signals. Premature termination within an operon leads to potentially deleterious defects in the expression of the downstream genes, but also provides an important surveillance mechanism. This Review discusses the actions of bacterial and phage antiterminators that allow RNA polymerase to override a terminator when the circumstances demand it.

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Year:  2011        PMID: 21478900      PMCID: PMC3125153          DOI: 10.1038/nrmicro2560

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


  118 in total

1.  Control of intrinsic transcription termination by N and NusA: the basic mechanisms.

Authors:  I Gusarov; E Nudler
Journal:  Cell       Date:  2001-11-16       Impact factor: 41.582

2.  Ribosomal protein S4 is a transcription factor with properties remarkably similar to NusA, a protein involved in both non-ribosomal and ribosomal RNA antitermination.

Authors:  M Torres; C Condon; J M Balada; C Squires; C L Squires
Journal:  EMBO J       Date:  2001-07-16       Impact factor: 11.598

Review 3.  Structural insights into the regulation of bacterial signalling proteins containing PRDs.

Authors:  H van Tilbeurgh; N Declerck
Journal:  Curr Opin Struct Biol       Date:  2001-12       Impact factor: 6.809

4.  Analysis of tryptophanase operon expression in vitro: accumulation of TnaC-peptidyl-tRNA in a release factor 2-depleted S-30 extract prevents Rho factor action, simulating induction.

Authors:  Feng Gong; Charles Yanofsky
Journal:  J Biol Chem       Date:  2002-03-05       Impact factor: 5.157

Review 5.  Multisubunit RNA polymerases.

Authors:  Patrick Cramer
Journal:  Curr Opin Struct Biol       Date:  2002-02       Impact factor: 6.809

6.  Modification of the properties of elongating RNA polymerase by persistent association with nascent antiterminator RNA.

Authors:  R Sen; R A King; R A Weisberg
Journal:  Mol Cell       Date:  2001-05       Impact factor: 17.970

7.  The transcriptional regulator RfaH stimulates RNA chain synthesis after recruitment to elongation complexes by the exposed nontemplate DNA strand.

Authors:  Irina Artsimovitch; Robert Landick
Journal:  Cell       Date:  2002-04-19       Impact factor: 41.582

8.  Shortening of RNA:DNA hybrid in the elongation complex of RNA polymerase is a prerequisite for transcription termination.

Authors:  Natalia Komissarova; Jodi Becker; Stephanie Solter; Maria Kireeva; Mikhail Kashlev
Journal:  Mol Cell       Date:  2002-11       Impact factor: 17.970

9.  The sigma(70) subunit of RNA polymerase is contacted by the (lambda)Q antiterminator during early elongation.

Authors:  Bryce E Nickels; Christine W Roberts; Haitao Sun; Jeffrey W Roberts; Ann Hochschild
Journal:  Mol Cell       Date:  2002-09       Impact factor: 17.970

10.  tRNA-mediated transcription antitermination in vitro: codon-anticodon pairing independent of the ribosome.

Authors:  Frank J Grundy; Wade C Winkler; Tina M Henkin
Journal:  Proc Natl Acad Sci U S A       Date:  2002-08-06       Impact factor: 11.205

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  93 in total

1.  Role of a Stem-Loop Structure in Helicobacter pylori cagA Transcript Stability.

Authors:  John T Loh; Aung Soe Lin; Amber C Beckett; Mark S McClain; Timothy L Cover
Journal:  Infect Immun       Date:  2019-01-24       Impact factor: 3.441

2.  Cooperative regulation of the Vibrio vulnificus nan gene cluster by NanR protein, cAMP receptor protein, and N-acetylmannosamine 6-phosphate.

Authors:  Byoung Sik Kim; Jungwon Hwang; Myung Hee Kim; Sang Ho Choi
Journal:  J Biol Chem       Date:  2011-09-28       Impact factor: 5.157

3.  Two transcription pause elements underlie a σ70-dependent pause cycle.

Authors:  Eric J Strobel; Jeffrey W Roberts
Journal:  Proc Natl Acad Sci U S A       Date:  2015-07-27       Impact factor: 11.205

4.  An RNA motif advances transcription by preventing Rho-dependent termination.

Authors:  Anastasia Sevostyanova; Eduardo A Groisman
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-16       Impact factor: 11.205

5.  Manipulating archaeal systems to permit analyses of transcription elongation-termination decisions in vitro.

Authors:  Alexandra M Gehring; Thomas J Santangelo
Journal:  Methods Mol Biol       Date:  2015

6.  Nascent RNA structure modulates the transcriptional dynamics of RNA polymerases.

Authors:  Bradley Zamft; Lacramioara Bintu; Toyotaka Ishibashi; Carlos Bustamante
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-21       Impact factor: 11.205

7.  The interaction surface of a bacterial transcription elongation factor required for complex formation with an antiterminator during transcription antitermination.

Authors:  Saurabh Mishra; Shalini Mohan; Sapna Godavarthi; Ranjan Sen
Journal:  J Biol Chem       Date:  2013-08-02       Impact factor: 5.157

Review 8.  Actinomycetes biosynthetic potential: how to bridge in silico and in vivo?

Authors:  Yuriy Rebets; Elke Brötz; Bogdan Tokovenko; Andriy Luzhetskyy
Journal:  J Ind Microbiol Biotechnol       Date:  2013-10-15       Impact factor: 3.346

Review 9.  Recognition modes of RNA tetraloops and tetraloop-like motifs by RNA-binding proteins.

Authors:  Roopa Thapar; Andria P Denmon; Edward P Nikonowicz
Journal:  Wiley Interdiscip Rev RNA       Date:  2013-10-03       Impact factor: 9.957

Review 10.  Transcription termination by the eukaryotic RNA polymerase III.

Authors:  Aneeshkumar G Arimbasseri; Keshab Rijal; Richard J Maraia
Journal:  Biochim Biophys Acta       Date:  2012-10-23
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