Literature DB >> 21478361

Complete genome sequence of Polymorphum gilvum SL003B-26A1T, a crude oil-degrading bacterium from oil-polluted saline soil.

Shu-Guang Li1, Yue-Qin Tang, Yong Nie, Man Cai, Xiao-Lei Wu.   

Abstract

Polymorphum gilvum SL003B-26A1(T) is a type strain of a newly published novel species in the novel genus Polymorphum. It was isolated from a crude oil-polluted saline soil in Shengli Oilfield, China, and was able to use the crude oil as the sole carbon source. Here we report the complete genome of SL003B-26A1(T) and the genes likely to be involved in oil degradation and ecological adaption.

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Year:  2011        PMID： 21478361      PMCID： PMC3133105          DOI： 10.1128/JB.00333-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  14 in total

1.  Genome sequencing in microfabricated high-density picolitre reactors.

Authors:  Marcel Margulies; Michael Egholm; William E Altman; Said Attiya; Joel S Bader; Lisa A Bemben; Jan Berka; Michael S Braverman; Yi-Ju Chen; Zhoutao Chen; Scott B Dewell; Lei Du; Joseph M Fierro; Xavier V Gomes; Brian C Godwin; Wen He; Scott Helgesen; Chun Heen Ho; Chun He Ho; Gerard P Irzyk; Szilveszter C Jando; Maria L I Alenquer; Thomas P Jarvie; Kshama B Jirage; Jong-Bum Kim; James R Knight; Janna R Lanza; John H Leamon; Steven M Lefkowitz; Ming Lei; Jing Li; Kenton L Lohman; Hong Lu; Vinod B Makhijani; Keith E McDade; Michael P McKenna; Eugene W Myers; Elizabeth Nickerson; John R Nobile; Ramona Plant; Bernard P Puc; Michael T Ronan; George T Roth; Gary J Sarkis; Jan Fredrik Simons; John W Simpson; Maithreyan Srinivasan; Karrie R Tartaro; Alexander Tomasz; Kari A Vogt; Greg A Volkmer; Shally H Wang; Yong Wang; Michael P Weiner; Pengguang Yu; Richard F Begley; Jonathan M Rothberg
Journal:  Nature       Date:  2005-07-31       Impact factor: 49.962

Review 2.  Alkane hydroxylases involved in microbial alkane degradation.

Authors:  Jan B van Beilen; Enrico G Funhoff
Journal:  Appl Microbiol Biotechnol       Date:  2007-01-11       Impact factor: 4.813

3.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

4.  Genome and proteome of long-chain alkane degrading Geobacillus thermodenitrificans NG80-2 isolated from a deep-subsurface oil reservoir.

Authors:  Lu Feng; Wei Wang; Jiansong Cheng; Yi Ren; Guang Zhao; Chunxu Gao; Yun Tang; Xueqian Liu; Weiqing Han; Xia Peng; Rulin Liu; Lei Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-19       Impact factor: 11.205

5.  Marinobacter gudaonensis sp. nov., isolated from an oil-polluted saline soil in a Chinese oilfield.

Authors:  Jun Gu; Hua Cai; Su-Lin Yu; Ri Qu; Bin Yin; Yu-Feng Guo; Jin-Yi Zhao; Xiao-Lei Wu
Journal:  Int J Syst Evol Microbiol       Date:  2007-02       Impact factor: 2.747

6.  Salinarimonas ramus sp. nov. and Tessaracoccus oleiagri sp. nov., isolated from a crude oil-contaminated saline soil.

Authors:  Man Cai; Lu Wang; Hua Cai; Yan Li; Ya-Nan Wang; Yue-Qin Tang; Xiao-Lei Wu
Journal:  Int J Syst Evol Microbiol       Date:  2010-08-27       Impact factor: 2.747

7.  Halomonas gudaonensis sp. nov., isolated from a saline soil contaminated by crude oil.

Authors:  Ya-Nan Wang; Hua Cai; Su-Lin Yu; Zhi-Yao Wang; Jie Liu; Xiao-Lei Wu
Journal:  Int J Syst Evol Microbiol       Date:  2007-05       Impact factor: 2.747

8.  Filomicrobium insigne sp. nov., isolated from an oil-polluted saline soil.

Authors:  Xiao-Lei Wu; Su-Lin Yu; Jun Gu; Gui-Fang Zhao; Chang-Qiao Chi
Journal:  Int J Syst Evol Microbiol       Date:  2009-02       Impact factor: 2.747

9.  A recalibrated molecular clock and independent origins for the cholera pandemic clones.

Authors:  Lu Feng; Peter R Reeves; Ruiting Lan; Yi Ren; Chunxu Gao; Zhemin Zhou; Yan Ren; Jiansong Cheng; Wei Wang; Jianmei Wang; Wubin Qian; Dan Li; Lei Wang
Journal:  PLoS One       Date:  2008-12-30       Impact factor: 3.240

10.  Accurate whole human genome sequencing using reversible terminator chemistry.

Authors:  David R Bentley; Shankar Balasubramanian; Harold P Swerdlow; Geoffrey P Smith; John Milton; Clive G Brown; Kevin P Hall; Dirk J Evers; Colin L Barnes; Helen R Bignell; Jonathan M Boutell; Jason Bryant; Richard J Carter; R Keira Cheetham; Anthony J Cox; Darren J Ellis; Michael R Flatbush; Niall A Gormley; Sean J Humphray; Leslie J Irving; Mirian S Karbelashvili; Scott M Kirk; Heng Li; Xiaohai Liu; Klaus S Maisinger; Lisa J Murray; Bojan Obradovic; Tobias Ost; Michael L Parkinson; Mark R Pratt; Isabelle M J Rasolonjatovo; Mark T Reed; Roberto Rigatti; Chiara Rodighiero; Mark T Ross; Andrea Sabot; Subramanian V Sankar; Aylwyn Scally; Gary P Schroth; Mark E Smith; Vincent P Smith; Anastassia Spiridou; Peta E Torrance; Svilen S Tzonev; Eric H Vermaas; Klaudia Walter; Xiaolin Wu; Lu Zhang; Mohammed D Alam; Carole Anastasi; Ify C Aniebo; David M D Bailey; Iain R Bancarz; Saibal Banerjee; Selena G Barbour; Primo A Baybayan; Vincent A Benoit; Kevin F Benson; Claire Bevis; Phillip J Black; Asha Boodhun; Joe S Brennan; John A Bridgham; Rob C Brown; Andrew A Brown; Dale H Buermann; Abass A Bundu; James C Burrows; Nigel P Carter; Nestor Castillo; Maria Chiara E Catenazzi; Simon Chang; R Neil Cooley; Natasha R Crake; Olubunmi O Dada; Konstantinos D Diakoumakos; Belen Dominguez-Fernandez; David J Earnshaw; Ugonna C Egbujor; David W Elmore; Sergey S Etchin; Mark R Ewan; Milan Fedurco; Louise J Fraser; Karin V Fuentes Fajardo; W Scott Furey; David George; Kimberley J Gietzen; Colin P Goddard; George S Golda; Philip A Granieri; David E Green; David L Gustafson; Nancy F Hansen; Kevin Harnish; Christian D Haudenschild; Narinder I Heyer; Matthew M Hims; Johnny T Ho; Adrian M Horgan; Katya Hoschler; Steve Hurwitz; Denis V Ivanov; Maria Q Johnson; Terena James; T A Huw Jones; Gyoung-Dong Kang; Tzvetana H Kerelska; Alan D Kersey; Irina Khrebtukova; Alex P Kindwall; Zoya Kingsbury; Paula I Kokko-Gonzales; Anil Kumar; Marc A Laurent; Cynthia T Lawley; Sarah E Lee; Xavier Lee; Arnold K Liao; Jennifer A Loch; Mitch Lok; Shujun Luo; Radhika M Mammen; John W Martin; Patrick G McCauley; Paul McNitt; Parul Mehta; Keith W Moon; Joe W Mullens; Taksina Newington; Zemin Ning; Bee Ling Ng; Sonia M Novo; Michael J O'Neill; Mark A Osborne; Andrew Osnowski; Omead Ostadan; Lambros L Paraschos; Lea Pickering; Andrew C Pike; Alger C Pike; D Chris Pinkard; Daniel P Pliskin; Joe Podhasky; Victor J Quijano; Come Raczy; Vicki H Rae; Stephen R Rawlings; Ana Chiva Rodriguez; Phyllida M Roe; John Rogers; Maria C Rogert Bacigalupo; Nikolai Romanov; Anthony Romieu; Rithy K Roth; Natalie J Rourke; Silke T Ruediger; Eli Rusman; Raquel M Sanches-Kuiper; Martin R Schenker; Josefina M Seoane; Richard J Shaw; Mitch K Shiver; Steven W Short; Ning L Sizto; Johannes P Sluis; Melanie A Smith; Jean Ernest Sohna Sohna; Eric J Spence; Kim Stevens; Neil Sutton; Lukasz Szajkowski; Carolyn L Tregidgo; Gerardo Turcatti; Stephanie Vandevondele; Yuli Verhovsky; Selene M Virk; Suzanne Wakelin; Gregory C Walcott; Jingwen Wang; Graham J Worsley; Juying Yan; Ling Yau; Mike Zuerlein; Jane Rogers; James C Mullikin; Matthew E Hurles; Nick J McCooke; John S West; Frank L Oaks; Peter L Lundberg; David Klenerman; Richard Durbin; Anthony J Smith
Journal:  Nature       Date:  2008-11-06       Impact factor: 49.962
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  5 in total

1.  The genome sequence of Polymorphum gilvum SL003B-26A1(T) reveals its genetic basis for crude oil degradation and adaptation to the saline soil.

Authors:  Yong Nie; Yue-Qin Tang; Yan Li; Chang-Qiao Chi; Man Cai; Xiao-Lei Wu
Journal:  PLoS One       Date:  2012-02-16       Impact factor: 3.240

2.  Oil degradation and biosurfactant production by the deep sea bacterium Dietzia maris As-13-3.

Authors:  Wanpeng Wang; Bobo Cai; Zongze Shao
Journal:  Front Microbiol       Date:  2014-12-16       Impact factor: 5.640

3.  Isolation and functional gene analyses of aromatic-hydrocarbon-degrading bacteria from a polychlorinated-dioxin-dechlorinating process.

Authors:  Shinichi Kaiya; Sati Utsunomiya; Saori Suzuki; Naoko Yoshida; Hiroyuki Futamata; Takeshi Yamada; Akira Hiraishi
Journal:  Microbes Environ       Date:  2012       Impact factor: 2.912

4.  The different potential of sponge bacterial symbionts in N₂ release indicated by the phylogenetic diversity and abundance analyses of denitrification genes, nirK and nosZ.

Authors:  Xia Zhang; Liming He; Fengli Zhang; Wei Sun; Zhiyong Li
Journal:  PLoS One       Date:  2013-06-10       Impact factor: 3.240

5.  Archaeal and bacterial diversity in an arsenic-rich shallow-sea hydrothermal system undergoing phase separation.

Authors:  Roy E Price; Ryan Lesniewski; Katja S Nitzsche; Anke Meyerdierks; Chad Saltikov; Thomas Pichler; Jan P Amend
Journal:  Front Microbiol       Date:  2013-07-09       Impact factor: 5.640
  5 in total

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