Literature DB >> 21478350

Genome sequence of the Spinosyns-producing bacterium Saccharopolyspora spinosa NRRL 18395.

Yuanlong Pan1, Xi Yang, Jing Li, Ruifen Zhang, Yongfei Hu, Yuguang Zhou, Jun Wang, Baoli Zhu.   

Abstract

Saccharopolyspora spinosa is a Gram-positive bacterium that produces spinosad, a well-known biodegradable insecticide that is used for agricultural pest control and has an excellent environmental and mammalian toxicological profile. Here, we present the first draft genome sequence of the type strain Saccharopolyspora spinosa NRRL 18395, which consists of 22 scaffolds.

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Year:  2011        PMID： 21478350      PMCID： PMC3133185          DOI： 10.1128/JB.00344-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  13 in total

1.  Cloning and analysis of the spinosad biosynthetic gene cluster of Saccharopolyspora spinosa.

Authors:  C Waldron; P Matsushima; P R Rosteck; M C Broughton; J Turner; K Madduri; K P Crawford; D J Merlo; R H Baltz
Journal:  Chem Biol       Date:  2001-05

2.  The KEGG resource for deciphering the genome.

Authors:  Minoru Kanehisa; Susumu Goto; Shuichi Kawashima; Yasushi Okuno; Masahiro Hattori
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

3.  The COG database: a tool for genome-scale analysis of protein functions and evolution.

Authors:  R L Tatusov; M Y Galperin; D A Natale; E V Koonin
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

4.  Tandem repeats finder: a program to analyze DNA sequences.

Authors:  G Benson
Journal:  Nucleic Acids Res       Date:  1999-01-15       Impact factor: 16.971

5.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

6.  Biosynthesis of spinosyn in Saccharopolyspora spinosa: synthesis of permethylated rhamnose and characterization of the functions of SpnH, SpnI, and SpnK.

Authors:  Hak Joong Kim; Jess A White-Phillip; Yasushi Ogasawara; Nara Shin; Eta A Isiorho; Hung-Wen Liu
Journal:  J Am Chem Soc       Date:  2010-03-10       Impact factor: 15.419

7.  Characterization of SpnQ from the spinosyn biosynthetic pathway of Saccharopolyspora spinosa: mechanistic and evolutionary implications for C-3 deoxygenation in deoxysugar biosynthesis.

Authors:  Lin Hong; Zongbao Zhao; Hung-wen Liu
Journal:  J Am Chem Soc       Date:  2006-11-08       Impact factor: 15.419

8.  The biosynthesis of spinosyn in Saccharopolyspora spinosa: synthesis of the cross-bridging precursor and identification of the function of SpnJ.

Authors:  Hak Joong Kim; Rongson Pongdee; Qingquan Wu; Lin Hong; Hung-wen Liu
Journal:  J Am Chem Soc       Date:  2007-11-07       Impact factor: 15.419

9.  The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata.

Authors:  Konstantinos Liolios; I-Min A Chen; Konstantinos Mavromatis; Nektarios Tavernarakis; Philip Hugenholtz; Victor M Markowitz; Nikos C Kyrpides
Journal:  Nucleic Acids Res       Date:  2009-11-13       Impact factor: 16.971

10.  MetaGeneAnnotator: detecting species-specific patterns of ribosomal binding site for precise gene prediction in anonymous prokaryotic and phage genomes.

Authors:  Hideki Noguchi; Takeaki Taniguchi; Takehiko Itoh
Journal:  DNA Res       Date:  2008-10-21       Impact factor: 4.458
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  10 in total

Review 1.  Genetic manipulation of secondary metabolite biosynthesis for improved production in Streptomyces and other actinomycetes.

Authors:  Richard H Baltz
Journal:  J Ind Microbiol Biotechnol       Date:  2015-09-12       Impact factor: 3.346

2.  Synthetic biology, genome mining, and combinatorial biosynthesis of NRPS-derived antibiotics: a perspective.

Authors:  Richard H Baltz
Journal:  J Ind Microbiol Biotechnol       Date:  2017-12-29       Impact factor: 3.346

Review 3.  Mangrove rare actinobacteria: taxonomy, natural compound, and discovery of bioactivity.

Authors:  Adzzie-Shazleen Azman; Iekhsan Othman; Saraswati S Velu; Kok-Gan Chan; Learn-Han Lee
Journal:  Front Microbiol       Date:  2015-08-20       Impact factor: 5.640

4.  Draft Genome Sequence of Saccharopolyspora rectivirgula.

Authors:  B M Fredrik Pettersson; P R Krishna Behra; Satyam Manduva; Sarbashis Das; Santanu Dasgupta; Alok Bhattacharya; Leif A Kirsebom
Journal:  Genome Announc       Date:  2014-01-09

5.  Draft Genome Sequence of Insecticidal Streptomyces sp. Strain PCS3-D2, Isolated from Mangrove Soil in Philippines.

Authors:  Aileen N Bayot-Custodio; Edwin P Alcantara; Teofila O Zulaybar
Journal:  Genome Announc       Date:  2014-06-12

6.  Phylogenetic relatedness determined between antibiotic resistance and 16S rRNA genes in actinobacteria.

Authors:  Marketa Sagova-Mareckova; Dana Ulanova; Petra Sanderova; Marek Omelka; Zdenek Kamenik; Jana Olsovska; Jan Kopecky
Journal:  BMC Microbiol       Date:  2015-04-01       Impact factor: 3.605

7.  Comparative transcriptomic analysis of two Saccharopolyspora spinosa strains reveals the relationships between primary metabolism and spinosad production.

Authors:  Yunpeng Zhang; Xiaomeng Liu; Tie Yin; Qi Li; Qiulong Zou; Kexue Huang; Dongsheng Guo; Xiaolin Zhang
Journal:  Sci Rep       Date:  2021-07-20       Impact factor: 4.379

8.  Differential proteomic profiling reveals regulatory proteins and novel links between primary metabolism and spinosad production in Saccharopolyspora spinosa.

Authors:  Qi Yang; Xuezhi Ding; Xuemei Liu; Shuang Liu; Yunjun Sun; Ziquan Yu; Shengbiao Hu; Jie Rang; Hao He; Lian He; Liqiu Xia
Journal:  Microb Cell Fact       Date:  2014-02-21       Impact factor: 5.328

9.  Genome-scale metabolic network reconstruction of Saccharopolyspora spinosa for spinosad production improvement.

Authors:  Xiaoyang Wang; Chuanbo Zhang; Meiling Wang; Wenyu Lu
Journal:  Microb Cell Fact       Date:  2014-03-15       Impact factor: 5.328

10.  Analysis of nucleotide diphosphate sugar dehydrogenases reveals family and group-specific relationships.

Authors:  Nicholas Freas; Peter Newton; John Perozich
Journal:  FEBS Open Bio       Date:  2016-01-11       Impact factor: 2.693
  10 in total

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