Literature DB >> 21478348

Genome sequence of Photobacterium mandapamensis strain svers.1.1, the bioluminescent symbiont of the cardinal fish Siphamia versicolor.

Henryk Urbanczyk1, Yoshitoshi Ogura, Tory A Hendry, Alison L Gould, Naomi Kiwaki, Joshua T Atkinson, Tetsuya Hayashi, Paul V Dunlap.   

Abstract

Photobacterium mandapamensis is one of three luminous Photobacterium species able to form species-specific bioluminescent symbioses with marine fishes. Here, we present the draft genome sequence of P. mandapamensis strain svers.1.1, the bioluminescent symbiont of the cardinal fish Siphamia versicolor, the first genome of a symbiotic, luminous Photobacterium species to be sequenced. Analysis of the sequence provides insight into differences between P. mandapamensis and other luminous and symbiotic bacteria in genes involved in quorum-sensing regulation of light production and establishment of symbiosis.

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Year:  2011        PMID: 21478348      PMCID: PMC3133217          DOI: 10.1128/JB.00370-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  10 in total

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Authors:  Kazuhisa Okada; Tetsuya Iida; Kumiko Kita-Tsukamoto; Takeshi Honda
Journal:  J Bacteriol       Date:  2005-01       Impact factor: 3.490

Review 2.  Vibrio fischeri and its host: it takes two to tango.

Authors:  Karen L Visick; Edward G Ruby
Journal:  Curr Opin Microbiol       Date:  2006-10-16       Impact factor: 7.934

Review 3.  Phylogeny, genomics, and symbiosis of Photobacterium.

Authors:  Henryk Urbanczyk; Jennifer C Ast; Paul V Dunlap
Journal:  FEMS Microbiol Rev       Date:  2010-09-30       Impact factor: 16.408

4.  Functional morphology of the luminescence system of Siphamia versicolor (Perciformes: Apogonidae), a bacterially luminous coral reef fish.

Authors:  Paul V Dunlap; Masaru Nakamura
Journal:  J Morphol       Date:  2011-05-03       Impact factor: 1.804

5.  Phylogenetic analysis of the incidence of lux gene horizontal transfer in Vibrionaceae.

Authors:  Henryk Urbanczyk; Jennifer C Ast; Allison J Kaeding; James D Oliver; Paul V Dunlap
Journal:  J Bacteriol       Date:  2008-03-21       Impact factor: 3.490

6.  Characterization of htrB and msbB mutants of the light organ symbiont Vibrio fischeri.

Authors:  Dawn M Adin; Nancy J Phillips; Bradford W Gibson; Michael A Apicella; Edward G Ruby; Margaret J McFall-Ngai; Daniel B Hall; Eric V Stabb
Journal:  Appl Environ Microbiol       Date:  2007-12-07       Impact factor: 4.792

7.  Phylogenetic diversity and cosymbiosis in the bioluminescent symbioses of "Photobacterium mandapamensis".

Authors:  Allison J Kaeding; Jennifer C Ast; Meghan M Pearce; Henryk Urbanczyk; Seishi Kimura; Hiromitsu Endo; Masaru Nakamura; Paul V Dunlap
Journal:  Appl Environ Microbiol       Date:  2007-03-16       Impact factor: 4.792

8.  Natural merodiploidy of the lux-rib operon of Photobacterium leiognathi from coastal waters of Honshu, Japan.

Authors:  Jennifer C Ast; Henryk Urbanczyk; Paul V Dunlap
Journal:  J Bacteriol       Date:  2007-06-22       Impact factor: 3.490

9.  Phylogenetic analysis of the lux operon distinguishes two evolutionarily distinct clades of Photobacterium leiognathi.

Authors:  Jennifer C Ast; Paul V Dunlap
Journal:  Arch Microbiol       Date:  2004-03-19       Impact factor: 2.552

10.  A single regulatory gene is sufficient to alter bacterial host range.

Authors:  Mark J Mandel; Michael S Wollenberg; Eric V Stabb; Karen L Visick; Edward G Ruby
Journal:  Nature       Date:  2009-02-01       Impact factor: 49.962

  10 in total
  8 in total

1.  Regulation of Bioluminescence in Photobacterium leiognathi Strain KNH6.

Authors:  Anne K Dunn; Bethany A Rader; Eric V Stabb; Mark J Mandel
Journal:  J Bacteriol       Date:  2015-09-08       Impact factor: 3.490

2.  Biosynthetic products from a nearshore-derived gram-negative bacterium enable reassessment of the kailuin depsipeptides.

Authors:  Christine M Theodore; Nicholas Lorig-Roach; Patrick C Still; Tyler A Johnson; Marija Drašković; Joshua A Schwochert; Cassandra N Naphen; Mitchell S Crews; Simone A Barker; Frederick A Valeriote; R Scott Lokey; Phillip Crews
Journal:  J Nat Prod       Date:  2015-02-20       Impact factor: 4.050

Review 3.  Acquisition of bioluminescent trait by non-luminous organisms from luminous organisms through various origins.

Authors:  Chatragadda Ramesh; Manabu Bessho-Uehara
Journal:  Photochem Photobiol Sci       Date:  2021-10-29       Impact factor: 3.982

4.  Genomic and physiological analysis reveals versatile metabolic capacity of deep-sea Photobacterium phosphoreum ANT-2200.

Authors:  Sheng-Da Zhang; Claire-Lise Santini; Wei-Jia Zhang; Valérie Barbe; Sophie Mangenot; Charlotte Guyomar; Marc Garel; Hai-Tao Chen; Xue-Gong Li; Qun-Jian Yin; Yuan Zhao; Jean Armengaud; Jean-Charles Gaillard; Séverine Martini; Nathalie Pradel; Claude Vidaud; François Alberto; Claudine Médigue; Christian Tamburini; Long-Fei Wu
Journal:  Extremophiles       Date:  2016-04-02       Impact factor: 2.395

5.  Description of New and Amended Clades of the Genus Photobacterium.

Authors:  Alejandro M Labella; M Dolores Castro; Manuel Manchado; Juan J Borrego
Journal:  Microorganisms       Date:  2018-03-12

6.  Diverse deep-sea anglerfishes share a genetically reduced luminous symbiont that is acquired from the environment.

Authors:  Lydia J Baker; Lindsay L Freed; Cole G Easson; Jose V Lopez; Danté Fenolio; Tracey T Sutton; Spencer V Nyholm; Tory A Hendry
Journal:  Elife       Date:  2019-10-01       Impact factor: 8.140

7.  Chromosome-Level Genome Assembly of the Bioluminescent Cardinalfish Siphamia tubifer: An Emerging Model for Symbiosis Research.

Authors:  A L Gould; J B Henderson; A W Lam
Journal:  Genome Biol Evol       Date:  2022-04-10       Impact factor: 4.065

8.  Diversification of two lineages of symbiotic Photobacterium.

Authors:  Henryk Urbanczyk; Yoshiko Urbanczyk; Tetsuya Hayashi; Yoshitoshi Ogura
Journal:  PLoS One       Date:  2013-12-13       Impact factor: 3.240

  8 in total

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