Literature DB >> 21477128

New insights into riboswitch regulation mechanisms.

Laurène Bastet1, Audrey Dubé, Eric Massé, Daniel A Lafontaine.   

Abstract

Riboswitches are genetic elements located in non-coding regions of some messenger RNAs (mRNAs) that are present in all three domains of life. The binding of ligands to riboswitches induces conformational changes in the mRNA molecule, resulting in modulation of gene transcription, or RNA splicing, translation or stability. This mechanism of regulation is particularly widespread in bacteria and allows a direct response to various metabolic changes. A large number of riboswitches have been discovered in the last few years, suggesting the existence of a huge diversity of regulatory ligands and genetic mechanisms of regulation. This review focuses on recent discoveries in riboswitch regulatory mechanisms as well as current outstanding challenges.
© 2011 Blackwell Publishing Ltd.

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Year:  2011        PMID: 21477128     DOI: 10.1111/j.1365-2958.2011.07654.x

Source DB:  PubMed          Journal:  Mol Microbiol        ISSN: 0950-382X            Impact factor:   3.501


  33 in total

1.  Riboswitch control of Rho-dependent transcription termination.

Authors:  Kerry Hollands; Sergey Proshkin; Svetlana Sklyarova; Vitaly Epshtein; Alexander Mironov; Evgeny Nudler; Eduardo A Groisman
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-19       Impact factor: 11.205

2.  Identification of ligand analogues that control c-di-GMP riboswitches.

Authors:  Kazuhiro Furukawa; Hongzhou Gu; Narasimhan Sudarsan; Yoshihiro Hayakawa; Mamoru Hyodo; Ronald R Breaker
Journal:  ACS Chem Biol       Date:  2012-06-19       Impact factor: 5.100

3.  Preparation of modified long-mer RNAs and analysis of FMN binding to the ypaA aptamer from B. subtilis.

Authors:  Jennifer Frommer; Robert Hieronymus; Tamil Selvi Arunachalam; Sabine Heeren; Maria Jenckel; Anne Strahl; Bettina Appel; Sabine Müller
Journal:  RNA Biol       Date:  2014-03-26       Impact factor: 4.652

4.  Riboswitch structure and dynamics by smFRET microscopy.

Authors:  Krishna C Suddala; Nils G Walter
Journal:  Methods Enzymol       Date:  2014       Impact factor: 1.600

Review 5.  Recent advances and future trends of riboswitches: attractive regulatory tools.

Authors:  Jean Paul Sinumvayo; Chunhua Zhao; Philibert Tuyishime
Journal:  World J Microbiol Biotechnol       Date:  2018-11-09       Impact factor: 3.312

6.  Dual-acting riboswitch control of translation initiation and mRNA decay.

Authors:  Marie-Pier Caron; Laurène Bastet; Antony Lussier; Maxime Simoneau-Roy; Eric Massé; Daniel A Lafontaine
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-19       Impact factor: 11.205

7.  The ydaO motif is an ATP-sensing riboswitch in Bacillus subtilis.

Authors:  Peter Y Watson; Martha J Fedor
Journal:  Nat Chem Biol       Date:  2012-10-21       Impact factor: 15.040

8.  Reduced model captures Mg(2+)-RNA interaction free energy of riboswitches.

Authors:  Ryan L Hayes; Jeffrey K Noel; Paul C Whitford; Udayan Mohanty; Karissa Y Sanbonmatsu; José N Onuchic
Journal:  Biophys J       Date:  2014-04-01       Impact factor: 4.033

Review 9.  The unmasking of 'junk' RNA reveals novel sRNAs: from processed RNA fragments to marooned riboswitches.

Authors:  Nicholas R De Lay; Danielle A Garsin
Journal:  Curr Opin Microbiol       Date:  2016-01-06       Impact factor: 7.934

10.  Product feedback regulation implicated in translational control of the Trypanosoma brucei S-adenosylmethionine decarboxylase regulatory subunit prozyme.

Authors:  Yanjing Xiao; Suong Nguyen; Sok Ho Kim; Oleg A Volkov; Benjamin P Tu; Margaret A Phillips
Journal:  Mol Microbiol       Date:  2013-05-02       Impact factor: 3.501

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