Literature DB >> 21474576

SID-1 is a dsRNA-selective dsRNA-gated channel.

Joseph D Shih1, Craig P Hunter.   

Abstract

Systemic RNAi in Caenorhabditis elegans requires the widely conserved transmembrane protein SID-1 to transport RNAi silencing signals between cells. When expressed in Drosophila S2 cells, C. elegans SID-1 enables passive dsRNA uptake from the culture medium, suggesting that SID-1 functions as a channel for the transport of double-stranded RNA (dsRNA). Here we show that nucleic acid transport by SID-1 is specific for dsRNA and that addition of dsRNA to SID-1 expressing cells results in changes in membrane conductance, which indicate that SID-1 is a dsRNA gated channel protein. Consistent with passive bidirectional transport, we find that the RNA induced silencing complex (RISC) is required to prevent the export of imported dsRNA and that retention of dsRNA by RISC does not seem to involve processing of retained dsRNA into siRNAs. Finally, we show that mimics of natural molecules that contain both single- and double-stranded dsRNA, such as hairpin RNA and pre-microRNA, can be transported by SID-1. These findings provide insight into the nature of potential endogenous RNA signaling molecules in animals.

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Year:  2011        PMID: 21474576      PMCID: PMC3096038          DOI: 10.1261/rna.2596511

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  38 in total

1.  Absence of transitive and systemic pathways allows cell-specific and isoform-specific RNAi in Drosophila.

Authors:  Jean-Yves Roignant; Clément Carré; Bruno Mugat; Dimitri Szymczak; Jean-Antoine Lepesant; Christophe Antoniewski
Journal:  RNA       Date:  2003-03       Impact factor: 4.942

2.  Genes required for systemic RNA interference in Caenorhabditis elegans.

Authors:  Marcel Tijsterman; Robin C May; Femke Simmer; Kristy L Okihara; Ronald H A Plasterk
Journal:  Curr Biol       Date:  2004-01-20       Impact factor: 10.834

3.  Kinetic analysis of the RNAi enzyme complex.

Authors:  Benjamin Haley; Phillip D Zamore
Journal:  Nat Struct Mol Biol       Date:  2004-05-30       Impact factor: 15.369

Review 4.  RNA silencing in plants.

Authors:  David Baulcombe
Journal:  Nature       Date:  2004-09-16       Impact factor: 49.962

5.  Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans.

Authors:  A Fire; S Xu; M K Montgomery; S A Kostas; S E Driver; C C Mello
Journal:  Nature       Date:  1998-02-19       Impact factor: 49.962

6.  R2D2, a bridge between the initiation and effector steps of the Drosophila RNAi pathway.

Authors:  Qinghua Liu; Tim A Rand; Savitha Kalidas; Fenghe Du; Hyun-Eui Kim; Dean P Smith; Xiaodong Wang
Journal:  Science       Date:  2003-09-26       Impact factor: 47.728

7.  Inducible systemic RNA silencing in Caenorhabditis elegans.

Authors:  Lisa Timmons; Hiroaki Tabara; Craig C Mello; Andrew Z Fire
Journal:  Mol Biol Cell       Date:  2003-07       Impact factor: 4.138

8.  A conserved siRNA-degrading RNase negatively regulates RNA interference in C. elegans.

Authors:  Scott Kennedy; Duo Wang; Gary Ruvkun
Journal:  Nature       Date:  2004-02-12       Impact factor: 49.962

9.  Distinct roles for Drosophila Dicer-1 and Dicer-2 in the siRNA/miRNA silencing pathways.

Authors:  Young Sik Lee; Kenji Nakahara; John W Pham; Kevin Kim; Zhengying He; Erik J Sontheimer; Richard W Carthew
Journal:  Cell       Date:  2004-04-02       Impact factor: 41.582

10.  A mutant T7 RNA polymerase as a DNA polymerase.

Authors:  R Sousa; R Padilla
Journal:  EMBO J       Date:  1995-09-15       Impact factor: 11.598

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  64 in total

1.  Establishment of Caenorhabditis elegans SID-1-dependent DNA delivery system in cultured silkworm cells.

Authors:  Jian Xu; Kaito Yoshimura; Hiroaki Mon; Zhiqing Li; Li Zhu; Kazuhiro Iiyama; Takahiro Kusakabe; Jae Man Lee
Journal:  Mol Biotechnol       Date:  2014-03       Impact factor: 2.695

2.  Double-stranded RNA made in C. elegans neurons can enter the germline and cause transgenerational gene silencing.

Authors:  Sindhuja Devanapally; Snusha Ravikumar; Antony M Jose
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-02       Impact factor: 11.205

Review 3.  Intercellular and systemic movement of RNA silencing signals.

Authors:  Charles W Melnyk; Attila Molnar; David C Baulcombe
Journal:  EMBO J       Date:  2011-08-31       Impact factor: 11.598

4.  Germ Granules Coordinate RNA-Based Epigenetic Inheritance Pathways.

Authors:  Anne E Dodson; Scott Kennedy
Journal:  Dev Cell       Date:  2019-08-08       Impact factor: 12.270

Review 5.  Artificial and natural RNA interactions between bacteria and C. elegans.

Authors:  Fabian Braukmann; David Jordan; Eric Miska
Journal:  RNA Biol       Date:  2017-03-23       Impact factor: 4.652

6.  Extracellular RNA is transported from one generation to the next in Caenorhabditis elegans.

Authors:  Julia Marré; Edward C Traver; Antony M Jose
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-17       Impact factor: 11.205

Review 7.  Uptake and impact of natural diet-derived small RNA in invertebrates: Implications for ecology and agriculture.

Authors:  Stephen Y Chan; Jonathan W Snow
Journal:  RNA Biol       Date:  2016-10-20       Impact factor: 4.652

8.  Systemic RNA Interference Deficiency-1 (SID-1) Extracellular Domain Selectively Binds Long Double-stranded RNA and Is Required for RNA Transport by SID-1.

Authors:  Weiqiang Li; Kristin S Koutmou; Daniel J Leahy; Min Li
Journal:  J Biol Chem       Date:  2015-06-11       Impact factor: 5.157

9.  Conserved tyrosine kinase promotes the import of silencing RNA into Caenorhabditis elegans cells.

Authors:  Antony M Jose; Yunsoo A Kim; Steven Leal-Ekman; Craig P Hunter
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-21       Impact factor: 11.205

10.  Uptake of extracellular double-stranded RNA by SID-2.

Authors:  Deborah L McEwan; Alexandra S Weisman; Craig P Hunter
Journal:  Mol Cell       Date:  2012-08-16       Impact factor: 17.970

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