Literature DB >> 21470650

Deep sequencing of Cotesia vestalis bracovirus reveals the complexity of a polydnavirus genome.

Ya-Feng Chen1, Fei Gao, Xi-Qian Ye, Shu-Jun Wei, Min Shi, Hua-Jun Zheng, Xue-Xin Chen.   

Abstract

Here we completed the whole genome sequence of Cotesia vestalis bracovirus (CvBV) by deep sequencing and compared the genome features of CvBV to those of other polydnaviruses (PDVs). The genome is 540,215 base pairs divided into 35 genomic segments that range from 2.6 to 39.2kb. Comparison of CvBV with other PDVs shows that more segments are found, including new segments that have no corresponding segments in other phylogenetically related PDVs, which suggests that there might be still more segments not being sequenced in the present known PDVs. We identified eight gene families and five genes in CvBV, including new genes which were first found in PDVs. Strikingly, we identified a putative helicase protein displaying similarity to human Pif1 helicase, which has never been reported for other PDVs. This finding will bring new insights in research of these special viruses.
Copyright © 2011 Elsevier Inc. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21470650     DOI: 10.1016/j.virol.2011.03.009

Source DB:  PubMed          Journal:  Virology        ISSN: 0042-6822            Impact factor:   3.616


  29 in total

1.  The bracovirus genome of the parasitoid wasp Cotesia congregata is amplified within 13 replication units, including sequences not packaged in the particles.

Authors:  Faustine Louis; Annie Bézier; Georges Periquet; Cristina Ferras; Jean-Michel Drezen; Catherine Dupuy
Journal:  J Virol       Date:  2013-06-26       Impact factor: 5.103

2.  Functional endogenous viral elements in the genome of the parasitoid wasp Cotesia congregata: insights into the evolutionary dynamics of bracoviruses.

Authors:  Annie Bézier; Faustine Louis; Séverine Jancek; Georges Periquet; Julien Thézé; Gabor Gyapay; Karine Musset; Jérome Lesobre; Patricia Lenoble; Catherine Dupuy; Dawn Gundersen-Rindal; Elisabeth A Herniou; Jean-Michel Drezen
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-08-12       Impact factor: 6.237

3.  Deep sequencing identifies viral and wasp genes with potential roles in replication of Microplitis demolitor Bracovirus.

Authors:  Gaelen R Burke; Michael R Strand
Journal:  J Virol       Date:  2012-01-11       Impact factor: 5.103

Review 4.  Polydnaviruses: From discovery to current insights.

Authors:  Michael R Strand; Gaelen R Burke
Journal:  Virology       Date:  2015-02-07       Impact factor: 3.616

5.  Functional annotation of Cotesia congregata bracovirus: identification of viral genes expressed in parasitized host immune tissues.

Authors:  Germain Chevignon; Julien Thézé; Sébastien Cambier; Julie Poulain; Corinne Da Silva; Annie Bézier; Karine Musset; Sébastien J M Moreau; Jean-Michel Drezen; Elisabeth Huguet
Journal:  J Virol       Date:  2014-05-28       Impact factor: 5.103

6.  A viral histone h4 joins to eukaryotic nucleosomes and alters host gene expression.

Authors:  Rahul Hepat; Ji-Joon Song; Daeweon Lee; Yonggyun Kim
Journal:  J Virol       Date:  2013-08-07       Impact factor: 5.103

7.  Diverse Array of New Viral Sequences Identified in Worldwide Populations of the Asian Citrus Psyllid (Diaphorina citri) Using Viral Metagenomics.

Authors:  Shahideh Nouri; Nidá Salem; Jared C Nigg; Bryce W Falk
Journal:  J Virol       Date:  2015-12-16       Impact factor: 5.103

8.  Evolutionary mechanisms driving the evolution of a large polydnavirus gene family coding for protein tyrosine phosphatases.

Authors:  Céline Serbielle; Stéphane Dupas; Elfie Perdereau; François Héricourt; Catherine Dupuy; Elisabeth Huguet; Jean-Michel Drezen
Journal:  BMC Evol Biol       Date:  2012-12-27       Impact factor: 3.260

9.  ContigScape: a Cytoscape plugin facilitating microbial genome gap closing.

Authors:  Biao Tang; Qi Wang; Minjun Yang; Feng Xie; Yongqiang Zhu; Ying Zhuo; Shengyue Wang; Hong Gao; Xiaoming Ding; Lixin Zhang; Guoping Zhao; Huajun Zheng
Journal:  BMC Genomics       Date:  2013-04-30       Impact factor: 3.969

10.  Adaptive selection on bracovirus genomes drives the specialization of Cotesia parasitoid wasps.

Authors:  Séverine Jancek; Annie Bézier; Philippe Gayral; Corentin Paillusson; Laure Kaiser; Stéphane Dupas; Bruno Pierre Le Ru; Valérie Barbe; Georges Periquet; Jean-Michel Drezen; Elisabeth A Herniou
Journal:  PLoS One       Date:  2013-05-28       Impact factor: 3.240

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.