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Literature DB >> 21468234

Transcriptional inhibition by DNA torsional stress.

Abstract

Most genome transactions are favored by DNA (-) torsional stress, i.e., unconstrained unwinding or supercoiling of DNA. A question raised here is whether DNA (+) torsional stress, which precludes DNA unwinding, could also be relevant in gene regulation. Such DNA twist dynamics could be determined by chromatin architecture.

Year: 2011 PMID： 21468234 PMCID： PMC3062399 DOI： 10.4161/trns.2.2.14807

Source DB: PubMed Journal: Transcription ISSN： 2154-1272

29 in total

1. Transport of torsional stress in DNA.

Authors: P Nelson
Journal: Proc Natl Acad Sci U S A Date: 1999-12-07 Impact factor: 11.205

Review 2. DNA topoisomerases: structure, function, and mechanism.

Authors: J J Champoux
Journal: Annu Rev Biochem Date: 2001 Impact factor: 23.643

3. Topological domain structure of the Escherichia coli chromosome.

Authors: Lisa Postow; Christine D Hardy; Javier Arsuaga; Nicholas R Cozzarelli
Journal: Genes Dev Date: 2004-07-15 Impact factor: 11.361

Review 4. Supercoil-driven DNA structures regulate genetic transactions.

Authors: Fedor Kouzine; David Levens
Journal: Front Biosci Date: 2007-05-01

5. Oscillations in supercoiling drive circadian gene expression in cyanobacteria.

Authors: Vikram Vijayan; Rick Zuzow; Erin K O'Shea
Journal: Proc Natl Acad Sci U S A Date: 2009-12-14 Impact factor: 11.205

6. Both DNA topoisomerases I and II relax 2 micron plasmid DNA in living yeast cells.

Authors: R A Saavedra; J A Huberman
Journal: Cell Date: 1986-04-11 Impact factor: 41.582

7. A method for genome-wide analysis of DNA helical tension by means of psoralen-DNA photobinding.

Authors: Ignacio Bermúdez; José García-Martínez; José E Pérez-Ortín; Joaquim Roca
Journal: Nucleic Acids Res Date: 2010-08-04 Impact factor: 16.971

8. The functional response of upstream DNA to dynamic supercoiling in vivo.

Authors: Fedor Kouzine; Suzanne Sanford; Zichrini Elisha-Feil; David Levens
Journal: Nat Struct Mol Biol Date: 2008-01-13 Impact factor: 15.369

9. Positional dependence of transcriptional inhibition by DNA torsional stress in yeast chromosomes.

Authors: Ricky S Joshi; Benjamin Piña; Joaquim Roca
Journal: EMBO J Date: 2010-01-07 Impact factor: 11.598

10. Isolation of type I and II DNA topoisomerase mutants from fission yeast: single and double mutants show different phenotypes in cell growth and chromatin organization.

Authors: T Uemura; M Yanagida
Journal: EMBO J Date: 1984-08 Impact factor: 11.598

20 in total

1. RNA Polymerase II Regulates Topoisomerase 1 Activity to Favor Efficient Transcription.

Authors: Laura Baranello; Damian Wojtowicz; Kairong Cui; Ballachanda N Devaiah; Hye-Jung Chung; Ka Yim Chan-Salis; Rajarshi Guha; Kelli Wilson; Xiaohu Zhang; Hongliang Zhang; Jason Piotrowski; Craig J Thomas; Dinah S Singer; B Franklin Pugh; Yves Pommier; Teresa M Przytycka; Fedor Kouzine; Brian A Lewis; Keji Zhao; David Levens
Journal: Cell Date: 2016-04-07 Impact factor: 41.582

Transcriptional inhibition by DNA torsional stress.

1. Transport of torsional stress in DNA.

Review 2. DNA topoisomerases: structure, function, and mechanism.

3. Topological domain structure of the Escherichia coli chromosome.

Review 4. Supercoil-driven DNA structures regulate genetic transactions.

5. Oscillations in supercoiling drive circadian gene expression in cyanobacteria.

6. Both DNA topoisomerases I and II relax 2 micron plasmid DNA in living yeast cells.

7. A method for genome-wide analysis of DNA helical tension by means of psoralen-DNA photobinding.

8. The functional response of upstream DNA to dynamic supercoiling in vivo.

9. Positional dependence of transcriptional inhibition by DNA torsional stress in yeast chromosomes.

10. Isolation of type I and II DNA topoisomerase mutants from fission yeast: single and double mutants show different phenotypes in cell growth and chromatin organization.

1. RNA Polymerase II Regulates Topoisomerase 1 Activity to Favor Efficient Transcription.

Review 2. The many lives of type IA topoisomerases.

Review 3. The importance of being supercoiled: how DNA mechanics regulate dynamic processes.

4. Top3α is the replicative topoisomerase in mitochondrial DNA replication.

5. Negative supercoils regulate meiotic crossover patterns in budding yeast.

Review 6. The contribution of co-transcriptional RNA:DNA hybrid structures to DNA damage and genome instability.

7. Transcription-dependent dynamic supercoiling is a short-range genomic force.

8. Evidence for a DNA-Based Mechanism of Intron-Mediated Enhancement.

9. Effect of DNA groove binder distamycin A upon chromatin structure.

10. Minor groove binder distamycin remodels chromatin but inhibits transcription.