Literature DB >> 21468230

Antibiotics trapping transcription initiation intermediates: To melt or to bend, what's first?

Konstantin Brodolin1.   

Abstract

Promoter DNA melting, culminating in the loading of the single-stranded DNA template into the RNA polymerase active site, is a key step in transcription initiation. Recently, the first transcription inhibitors found to block distinct steps of promoter melting were characterized. Here, the impact of these studies is discussed with respect to the current models of transcription initiation.

Year:  2011        PMID: 21468230      PMCID: PMC3062395          DOI: 10.4161/trns.2.2.14366

Source DB:  PubMed          Journal:  Transcription        ISSN: 2154-1272


  32 in total

1.  Structural organization of bacterial RNA polymerase holoenzyme and the RNA polymerase-promoter open complex.

Authors:  Vladimir Mekler; Ekaterine Kortkhonjia; Jayanta Mukhopadhyay; Jennifer Knight; Andrei Revyakin; Achillefs N Kapanidis; Wei Niu; Yon W Ebright; Ronald Levy; Richard H Ebright
Journal:  Cell       Date:  2002-03-08       Impact factor: 41.582

2.  Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 A resolution.

Authors:  Dmitry G Vassylyev; Shun-ichi Sekine; Oleg Laptenko; Jookyung Lee; Marina N Vassylyeva; Sergei Borukhov; Shigeyuki Yokoyama
Journal:  Nature       Date:  2002-05-08       Impact factor: 49.962

3.  Promoter melting triggered by bacterial RNA polymerase occurs in three steps.

Authors:  Jie Chen; Seth A Darst; D Thirumalai
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-01       Impact factor: 11.205

4.  Structural basis for transcription elongation by bacterial RNA polymerase.

Authors:  Dmitry G Vassylyev; Marina N Vassylyeva; Anna Perederina; Tahir H Tahirov; Irina Artsimovitch
Journal:  Nature       Date:  2007-06-20       Impact factor: 49.962

5.  DNA footprints of the two kinetically significant intermediates in formation of an RNA polymerase-promoter open complex: evidence that interactions with start site and downstream DNA induce sequential conformational changes in polymerase and DNA.

Authors:  M L Craig; O V Tsodikov; K L McQuade; P E Schlax; M W Capp; R M Saecker; M T Record
Journal:  J Mol Biol       Date:  1998-11-06       Impact factor: 5.469

6.  Probing DNA binding, DNA opening, and assembly of a downstream clamp/jaw in Escherichia coli RNA polymerase-lambdaP(R) promoter complexes using salt and the physiological anion glutamate.

Authors:  Wayne S Kontur; Michael W Capp; Theodore J Gries; Ruth M Saecker; M Thomas Record
Journal:  Biochemistry       Date:  2010-05-25       Impact factor: 3.162

7.  Changes in the DNA structure of the lac UV5 promoter during formation of an open complex with Escherichia coli RNA polymerase.

Authors:  A Spassky; K Kirkegaard; H Buc
Journal:  Biochemistry       Date:  1985-05-21       Impact factor: 3.162

8.  Inhibition by lipiarmycin of bacteriophage growth in Bacillus subtilis.

Authors:  M S Osburne; A L Sonenshein
Journal:  J Virol       Date:  1980-03       Impact factor: 5.103

9.  Dissection of two hallmarks of the open promoter complex by mutation in an RNA polymerase core subunit.

Authors:  S Nechaev; M Chlenov; K Severinov
Journal:  J Biol Chem       Date:  2000-08-18       Impact factor: 5.157

10.  Transcription inactivation through local refolding of the RNA polymerase structure.

Authors:  Georgiy A Belogurov; Marina N Vassylyeva; Anastasiya Sevostyanova; James R Appleman; Alan X Xiang; Ricardo Lira; Stephen E Webber; Sergiy Klyuyev; Evgeny Nudler; Irina Artsimovitch; Dmitry G Vassylyev
Journal:  Nature       Date:  2008-10-22       Impact factor: 49.962

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  2 in total

1.  Coupling of downstream RNA polymerase-promoter interactions with formation of catalytically competent transcription initiation complex.

Authors:  Vladimir Mekler; Leonid Minakhin; Sergei Borukhov; Arkady Mustaev; Konstantin Severinov
Journal:  J Mol Biol       Date:  2014-10-13       Impact factor: 5.469

2.  Conformational heterogeneity and bubble dynamics in single bacterial transcription initiation complexes.

Authors:  Diego Duchi; Kristofer Gryte; Nicole C Robb; Zakia Morichaud; Carol Sheppard; Konstantin Brodolin; Sivaramesh Wigneshweraraj; Achillefs N Kapanidis
Journal:  Nucleic Acids Res       Date:  2018-01-25       Impact factor: 16.971

  2 in total

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