Literature DB >> 21468204

Engineering scalable biological systems.

Timothy K Lu1.   

Abstract

Synthetic biology is focused on engineering biological organisms to study natural systems and to provide new solutions for pressing medical, industrial and environmental problems. At the core of engineered organisms are synthetic biological circuits that execute the tasks of sensing inputs, processing logic and performing output functions. In the last decade, significant progress has been made in developing basic designs for a wide range of biological circuits in bacteria, yeast and mammalian systems. However, significant challenges in the construction, probing, modulation and debugging of synthetic biological systems must be addressed in order to achieve scalable higher-complexity biological circuits. Furthermore, concomitant efforts to evaluate the safety and biocontainment of engineered organisms and address public and regulatory concerns will be necessary to ensure that technological advances are translated into real-world solutions.
© 2010 Landes Bioscience

Entities:  

Keywords:  biological circuits; biological modulators; biological probes; engineered organisms; high-throughput design; modelling; regulatory issues; synthetic biology

Mesh:

Substances:

Year:  2010        PMID: 21468204      PMCID: PMC3056087          DOI: 10.4161/bbug.1.6.13086

Source DB:  PubMed          Journal:  Bioeng Bugs        ISSN: 1949-1018


  70 in total

1.  Aptamer beacons for the direct detection of proteins.

Authors:  N Hamaguchi; A Ellington; M Stanton
Journal:  Anal Biochem       Date:  2001-07-15       Impact factor: 3.365

2.  Reprogramming control of an allosteric signaling switch through modular recombination.

Authors:  John E Dueber; Brian J Yeh; Kayam Chak; Wendell A Lim
Journal:  Science       Date:  2003-09-26       Impact factor: 47.728

3.  The zinc finger nuclease monopoly.

Authors:  Christopher Thomas Scott
Journal:  Nat Biotechnol       Date:  2005-08       Impact factor: 54.908

4.  New unstable variants of green fluorescent protein for studies of transient gene expression in bacteria.

Authors:  J B Andersen; C Sternberg; L K Poulsen; S P Bjorn; M Givskov; S Molin
Journal:  Appl Environ Microbiol       Date:  1998-06       Impact factor: 4.792

Review 5.  lambda Repressor and cro--components of an efficient molecular switch.

Authors:  A D Johnson; A R Poteete; G Lauer; R T Sauer; G K Ackers; M Ptashne
Journal:  Nature       Date:  1981-11-19       Impact factor: 49.962

6.  Complete nucleotide sequence of bacteriophage MS2 RNA: primary and secondary structure of the replicase gene.

Authors:  W Fiers; R Contreras; F Duerinck; G Haegeman; D Iserentant; J Merregaert; W Min Jou; F Molemans; A Raeymaekers; A Van den Berghe; G Volckaert; M Ysebaert
Journal:  Nature       Date:  1976-04-08       Impact factor: 49.962

7.  Programming cells by multiplex genome engineering and accelerated evolution.

Authors:  Harris H Wang; Farren J Isaacs; Peter A Carr; Zachary Z Sun; George Xu; Craig R Forest; George M Church
Journal:  Nature       Date:  2009-07-26       Impact factor: 49.962

8.  An engineered epigenetic transgene switch in mammalian cells.

Authors:  Beat P Kramer; Alessandro Usseglio Viretta; Marie Daoud-El-Baba; Dominique Aubel; Wilfried Weber; Martin Fussenegger
Journal:  Nat Biotechnol       Date:  2004-06-06       Impact factor: 54.908

9.  Engineering the Salmonella type III secretion system to export spider silk monomers.

Authors:  Daniel M Widmaier; Danielle Tullman-Ercek; Ethan A Mirsky; Rena Hill; Sridhar Govindarajan; Jeremy Minshull; Christopher A Voigt
Journal:  Mol Syst Biol       Date:  2009-09-15       Impact factor: 11.429

10.  A fast, robust and tunable synthetic gene oscillator.

Authors:  Jesse Stricker; Scott Cookson; Matthew R Bennett; William H Mather; Lev S Tsimring; Jeff Hasty
Journal:  Nature       Date:  2008-10-29       Impact factor: 49.962

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  3 in total

1.  Rational diversification of a promoter providing fine-tuned expression and orthogonal regulation for synthetic biology.

Authors:  Benjamin A Blount; Tim Weenink; Serge Vasylechko; Tom Ellis
Journal:  PLoS One       Date:  2012-03-19       Impact factor: 3.240

2.  Diagnostics for stochastic genome-scale modeling via model slicing and debugging.

Authors:  Kevin J Tsai; Chuan-Hsiung Chang
Journal:  PLoS One       Date:  2014-11-04       Impact factor: 3.240

3.  Validation of an entirely in vitro approach for rapid prototyping of DNA regulatory elements for synthetic biology.

Authors:  James Chappell; Kirsten Jensen; Paul S Freemont
Journal:  Nucleic Acids Res       Date:  2013-01-31       Impact factor: 16.971

  3 in total

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