Literature DB >> 21463591

Antimicrobial protegrin-1 forms amyloid-like fibrils with rapid kinetics suggesting a functional link.

Hyunbum Jang1, Fernando Teran Arce, Mirela Mustata, Srinivasan Ramachandran, Ricardo Capone, Ruth Nussinov, Ratnesh Lal.   

Abstract

Protegrin-1 (PG-1) is an 18 residues long, cysteine-rich β-sheet antimicrobial peptide (AMP). PG-1 induces strong cytotoxic activities on cell membrane and acts as a potent antibiotic agent. Earlier we reported that its cytotoxicity is mediated by its channel-forming ability. In this study, we have examined the amyloidogenic fibril formation properties of PG-1 in comparison with a well-defined amyloid, the amyloid-β (Aβ(1-42)) peptide. We have used atomic force microscopy (AFM) and thioflavin-T staining to investigate the kinetics of PG-1 fibrils growth and molecular dynamics simulations to elucidate the underlying mechanism. AFM images of PG-1 on a highly hydrophilic surface (mica) show fibrils with morphological similarities to Aβ(1-42) fibrils. Real-time AFM imaging of fibril growth suggests that PG-1 fibril growth follows a relatively fast kinetics compared to the Aβ(1-42) fibrils. The AFM results are in close agreement with results from thioflavin-T staining data. Furthermore, the results indicate that PG-1 forms fibrils in solution. Significantly, in contrast, we do not detect fibrillar structures of PG-1 on an anionic lipid bilayer 2-dioleoyl-sn-glycero-3-phospho-L-serine/1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoethanolamine; only small PG-1 oligomers can be observed. Molecular dynamics simulations are able to identify the presence of these small oligomers on the membrane bilayer. Thus, our current results show that cytotoxic AMP PG-1 is amyloidogenic and capable of forming fibrils. Overall, comparing β-rich AMPs and amyloids such as Aβ, in addition to cytotoxicity and amyloidogenicity, they share a common structural motif, and are channel forming. These combined properties support a functional relationship between amyloidogenic peptides and β-sheet-rich cytolytic AMPs, suggesting that amyloids channels may have an antimicrobial function.
Copyright © 2011 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 21463591      PMCID: PMC3072611          DOI: 10.1016/j.bpj.2011.01.072

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  64 in total

1.  Crystallization of antimicrobial pores in membranes: magainin and protegrin.

Authors:  L Yang; T M Weiss; R I Lehrer; H W Huang
Journal:  Biophys J       Date:  2000-10       Impact factor: 4.033

2.  β-Barrel topology of Alzheimer's β-amyloid ion channels.

Authors:  Hyunbum Jang; Fernando Teran Arce; Srinivasan Ramachandran; Ricardo Capone; Ratnesh Lal; Ruth Nussinov
Journal:  J Mol Biol       Date:  2010-10-21       Impact factor: 5.469

Review 3.  Amyloidogenic protein-membrane interactions: mechanistic insight from model systems.

Authors:  Sara M Butterfield; Hilal A Lashuel
Journal:  Angew Chem Int Ed Engl       Date:  2010-08-02       Impact factor: 15.336

Review 4.  Biology of amyloid: structure, function, and regulation.

Authors:  Jason Greenwald; Roland Riek
Journal:  Structure       Date:  2010-10-13       Impact factor: 5.006

Review 5.  Alzheimer's amyloid fibrils: structure and assembly.

Authors:  L C Serpell
Journal:  Biochim Biophys Acta       Date:  2000-07-26

6.  Truncated beta-amyloid peptide channels provide an alternative mechanism for Alzheimer's Disease and Down syndrome.

Authors:  Hyunbum Jang; Fernando Teran Arce; Srinivasan Ramachandran; Ricardo Capone; Rushana Azimova; Bruce L Kagan; Ruth Nussinov; Ratnesh Lal
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-22       Impact factor: 11.205

7.  Amyloid peptide channels: blockade by zinc and inhibition by Congo red (amyloid channel block).

Authors:  Y Hirakura; W W Yiu; A Yamamoto; B L Kagan
Journal:  Amyloid       Date:  2000-09       Impact factor: 7.141

8.  Antimicrobial protegrin-1 forms ion channels: molecular dynamic simulation, atomic force microscopy, and electrical conductance studies.

Authors:  Ricardo Capone; Mirela Mustata; Hyunbum Jang; Fernando Teran Arce; Ruth Nussinov; Ratnesh Lal
Journal:  Biophys J       Date:  2010-06-02       Impact factor: 4.033

9.  Structural convergence among diverse, toxic beta-sheet ion channels.

Authors:  Hyunbum Jang; Fernando Teran Arce; Srinivasan Ramachandran; Ricardo Capone; Ratnesh Lal; Ruth Nussinov
Journal:  J Phys Chem B       Date:  2010-07-29       Impact factor: 2.991

Review 10.  Polymorphism in Alzheimer Abeta amyloid organization reflects conformational selection in a rugged energy landscape.

Authors:  Yifat Miller; Buyong Ma; Ruth Nussinov
Journal:  Chem Rev       Date:  2010-08-11       Impact factor: 60.622

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  49 in total

1.  Mechanism of membrane permeation induced by synthetic β-hairpin peptides.

Authors:  Kshitij Gupta; Hyunbum Jang; Kevin Harlen; Anu Puri; Ruth Nussinov; Joel P Schneider; Robert Blumenthal
Journal:  Biophys J       Date:  2013-11-05       Impact factor: 4.033

2.  Antimicrobial amyloids?

Authors:  Bruce L Kagan
Journal:  Biophys J       Date:  2011-04-06       Impact factor: 4.033

3.  Antibiofilm peptides as a promising strategy: comparative research.

Authors:  Jing Li; Dongru Chen; Huancai Lin
Journal:  Appl Microbiol Biotechnol       Date:  2021-01-21       Impact factor: 4.813

4.  Common mechanism unites membrane poration by amyloid and antimicrobial peptides.

Authors:  Nicholas B Last; Andrew D Miranker
Journal:  Proc Natl Acad Sci U S A       Date:  2013-04-01       Impact factor: 11.205

Review 5.  A common landscape for membrane-active peptides.

Authors:  Nicholas B Last; Diana E Schlamadinger; Andrew D Miranker
Journal:  Protein Sci       Date:  2013-06-11       Impact factor: 6.725

6.  Atomic force microscopy and MD simulations reveal pore-like structures of all-D-enantiomer of Alzheimer's β-amyloid peptide: relevance to the ion channel mechanism of AD pathology.

Authors:  Laura Connelly; Hyunbum Jang; Fernando Teran Arce; Ricardo Capone; Samuel A Kotler; Srinivasan Ramachandran; Bruce L Kagan; Ruth Nussinov; Ratnesh Lal
Journal:  J Phys Chem B       Date:  2012-01-25       Impact factor: 2.991

7.  Oligomerization of the antimicrobial peptide Protegrin-5 in a membrane-mimicking environment. Structural studies by high-resolution NMR spectroscopy.

Authors:  Konstantin S Usachev; Olga A Kolosova; Evelina A Klochkova; Aidar R Yulmetov; Albert V Aganov; Vladimir V Klochkov
Journal:  Eur Biophys J       Date:  2016-09-02       Impact factor: 1.733

Review 8.  Potential role of atomic force microscopy in systems biology.

Authors:  Srinivasan Ramachandran; Fernando Teran Arce; Ratnesh Lal
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2011-07-15

9.  High-resolution NMR structure of the antimicrobial peptide protegrin-2 in the presence of DPC micelles.

Authors:  K S Usachev; S V Efimov; O A Kolosova; A V Filippov; V V Klochkov
Journal:  J Biomol NMR       Date:  2014-11-28       Impact factor: 2.835

10.  Mechanisms for the Insertion of Toxic, Fibril-like β-Amyloid Oligomers into the Membrane.

Authors:  Hyunbum Jang; Laura Connelly; Fernando Teran Arce; Srinivasan Ramachandran; Bruce L Kagan; Ratnesh Lal; Ruth Nussinov
Journal:  J Chem Theory Comput       Date:  2012-12-05       Impact factor: 6.006

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