Literature DB >> 21461341

Data Synthesis and Tool Development for Exploring Imaging Genomic Patterns.

Sungeun Kim, Li Shen, Andrew J Saykin, John D West.   

Abstract

Recent advances in brain imaging and high throughput genotyping techniques enable new approaches to study the influence of genetic variation on brain structure and function. However, major computational challenges are bottlenecks for comprehensive joint analysis of these high-dimensional image and genomic data. We report our initial progress in developing an imaging genomic browsing system for integrated exploration of neuroimaging and genomic data. We describe a method for synthesizing a set of realistic neuroimaging and genomic data, where the relationships between imaging phenotypes and genotypes are known. This data set is used to demonstrate the functionality of our system, which is designed for effectively exploring the neuroanatomical distribution of statistical results that measure the associations between brain imaging phenotypes and genotypes on a genome-wide scale. The proposed system has substantial potential for enabling discovery of important imaging genomic associations through visual evaluation and can be extended towards several directions.

Entities:  

Year:  2009        PMID: 21461341      PMCID: PMC3065788          DOI: 10.1109/CIBCB.2009.4925742

Source DB:  PubMed          Journal:  IEEE Symp Comput Intell Bioinforma Comput Biol Proc


  17 in total

1.  Increased brain activation during working memory in cognitively intact adults with the APOE epsilon4 allele.

Authors:  Heather A Wishart; Andrew J Saykin; Laura A Rabin; Robert B Santulli; Laura A Flashman; Stephen J Guerin; Alexander C Mamourian; Dorothy R Belloni; C Harker Rhodes; Thomas W McAllister
Journal:  Am J Psychiatry       Date:  2006-09       Impact factor: 18.112

2.  Exploratory visual analysis of pharmacogenomic results.

Authors:  David M Reif; Scott M Dudek; Christian M Shaffer; Janey Wang; Jason H Moore
Journal:  Pac Symp Biocomput       Date:  2005

Review 3.  Genome-wide association studies for common diseases and complex traits.

Authors:  Joel N Hirschhorn; Mark J Daly
Journal:  Nat Rev Genet       Date:  2005-02       Impact factor: 53.242

Review 4.  Neuroimaging endophenotypes: strategies for finding genes influencing brain structure and function.

Authors:  David C Glahn; Paul M Thompson; John Blangero
Journal:  Hum Brain Mapp       Date:  2007-06       Impact factor: 5.038

5.  Older adults with cognitive complaints show brain atrophy similar to that of amnestic MCI.

Authors:  A J Saykin; H A Wishart; L A Rabin; R B Santulli; L A Flashman; J D West; T L McHugh; A C Mamourian
Journal:  Neurology       Date:  2006-09-12       Impact factor: 9.910

6.  Reduced hippocampal volume in non-demented carriers of the apolipoprotein E epsilon4: relation to chronological age and recognition memory.

Authors:  Johanna Lind; Anne Larsson; Jonas Persson; Martin Ingvar; Lars-Göran Nilsson; Lars Bäckman; Rolf Adolfsson; Marc Cruts; Kristel Sleegers; Christine Van Broeckhoven; Lars Nyberg
Journal:  Neurosci Lett       Date:  2006-01-06       Impact factor: 3.046

Review 7.  Imaging genetics: perspectives from studies of genetically driven variation in serotonin function and corticolimbic affective processing.

Authors:  Ahmad R Hariri; Emily M Drabant; Daniel R Weinberger
Journal:  Biol Psychiatry       Date:  2006-01-25       Impact factor: 13.382

Review 8.  Developmental imaging genetics: challenges and promises for translational research.

Authors:  Essi Viding; Douglas E Williamson; Ahmad R Hariri
Journal:  Dev Psychopathol       Date:  2006

9.  Designing candidate gene and genome-wide case-control association studies.

Authors:  Krina T Zondervan; Lon R Cardon
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

10.  Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham Study.

Authors:  Sudha Seshadri; Anita L DeStefano; Rhoda Au; Joseph M Massaro; Alexa S Beiser; Margaret Kelly-Hayes; Carlos S Kase; Ralph B D'Agostino; Charles Decarli; Larry D Atwood; Philip A Wolf
Journal:  BMC Med Genet       Date:  2007-09-19       Impact factor: 2.103

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  2 in total

1.  Visual exploration of genetic association with voxel-based imaging phenotypes in an MCI/AD study.

Authors:  Sungeun Kim; Li Shen; Andrew J Saykin; John D West
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2009

2.  GPU Accelerated Browser for Neuroimaging Genomics.

Authors:  Bob Zigon; Huang Li; Xiaohui Yao; Shiaofen Fang; Mohammad Al Hasan; Jingwen Yan; Jason H Moore; Andrew J Saykin; Li Shen
Journal:  Neuroinformatics       Date:  2018-10
  2 in total

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