Literature DB >> 21460085

Genome sequence of Chthoniobacter flavus Ellin428, an aerobic heterotrophic soil bacterium.

Ravi Kant1, Mark W J van Passel, Airi Palva, Susan Lucas, Alla Lapidus, Tijana Glavina del Rio, Eileen Dalin, Hope Tice, David Bruce, Lynne Goodwin, Sam Pitluck, Frank W Larimer, Miriam L Land, Loren Hauser, Parveen Sangwan, Willem M de Vos, Peter H Janssen, Hauke Smidt.   

Abstract

Chthoniobacter flavus Ellin428 is the first isolate from the class Spartobacteria of the bacterial phylum Verrucomicrobia. C. flavus Ellin428 can metabolize many of the saccharide components of plant biomass but is incapable of growth on amino acids or organic acids other than pyruvate.

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Year:  2011        PMID： 21460085      PMCID： PMC3133135          DOI： 10.1128/JB.00295-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  9 in total

1.  Detection and cultivation of soil verrucomicrobia.

Authors:  Parveen Sangwan; Suzana Kovac; Kathryn E R Davis; Michelle Sait; Peter H Janssen
Journal:  Appl Environ Microbiol       Date:  2005-12       Impact factor: 4.792

Review 2.  The Planctomycetes, Verrucomicrobia, Chlamydiae and sister phyla comprise a superphylum with biotechnological and medical relevance.

Authors:  Michael Wagner; Matthias Horn
Journal:  Curr Opin Biotechnol       Date:  2006-05-15       Impact factor: 9.740

3.  Prodigal: prokaryotic gene recognition and translation initiation site identification.

Authors:  Doug Hyatt; Gwo-Liang Chen; Philip F Locascio; Miriam L Land; Frank W Larimer; Loren J Hauser
Journal:  BMC Bioinformatics       Date:  2010-03-08       Impact factor: 3.169

4.  Chthoniobacter flavus gen. nov., sp. nov., the first pure-culture representative of subdivision two, Spartobacteria classis nov., of the phylum Verrucomicrobia.

Authors:  Parveen Sangwan; Xiaolei Chen; Philip Hugenholtz; Peter H Janssen
Journal:  Appl Environ Microbiol       Date:  2004-10       Impact factor: 4.792

5.  The Mucin degrader Akkermansia muciniphila is an abundant resident of the human intestinal tract.

Authors:  Muriel Derrien; M Carmen Collado; Kaouther Ben-Amor; Seppo Salminen; Willem M de Vos
Journal:  Appl Environ Microbiol       Date:  2007-12-14       Impact factor: 4.792

6.  The genome of Akkermansia muciniphila, a dedicated intestinal mucin degrader, and its use in exploring intestinal metagenomes.

Authors:  Mark W J van Passel; Ravi Kant; Erwin G Zoetendal; Caroline M Plugge; Muriel Derrien; Stephanie A Malfatti; Patrick S G Chain; Tanja Woyke; Airi Palva; Willem M de Vos; Hauke Smidt
Journal:  PLoS One       Date:  2011-03-03       Impact factor: 3.240

7.  Phylum Verrucomicrobia representatives share a compartmentalized cell plan with members of bacterial phylum Planctomycetes.

Authors:  Kuo-Chang Lee; Richard I Webb; Peter H Janssen; Parveen Sangwan; Tony Romeo; James T Staley; John A Fuerst
Journal:  BMC Microbiol       Date:  2009-01-08       Impact factor: 3.605

8.  The integrated microbial genomes (IMG) system.

Authors:  Victor M Markowitz; Frank Korzeniewski; Krishna Palaniappan; Ernest Szeto; Greg Werner; Anu Padki; Xueling Zhao; Inna Dubchak; Philip Hugenholtz; Iain Anderson; Athanasios Lykidis; Konstantinos Mavromatis; Natalia Ivanova; Nikos C Kyrpides
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

9.  The compartmentalized bacteria of the planctomycetes-verrucomicrobia-chlamydiae superphylum have membrane coat-like proteins.

Authors:  Rachel Santarella-Mellwig; Josef Franke; Andreas Jaedicke; Mátyás Gorjánácz; Ulrike Bauer; Aidan Budd; Iain W Mattaj; Damien P Devos
Journal:  PLoS Biol       Date:  2010-01-19       Impact factor: 8.029
  9 in total
  19 in total

1.  Different bacterial populations associated with the roots and rhizosphere of rice incorporate plant-derived carbon.

Authors:  Marcela Hernández; Marc G Dumont; Quan Yuan; Ralf Conrad
Journal:  Appl Environ Microbiol       Date:  2015-01-23       Impact factor: 4.792

2.  Total nitrogen influence bacterial community structure of active layer permafrost across summer and winter seasons in Ny-Ålesund, Svalbard.

Authors:  Dinesh Sanka Loganathachetti; Siddarthan Venkatachalam; T Jabir; P V Vipindas; K P Krishnan
Journal:  World J Microbiol Biotechnol       Date:  2022-01-06       Impact factor: 3.312

3.  Molecular Signatures for the PVC Clade (Planctomycetes, Verrucomicrobia, Chlamydiae, and Lentisphaerae) of Bacteria Provide Insights into Their Evolutionary Relationships.

Authors:  Radhey S Gupta; Vaibhav Bhandari; Hafiz Sohail Naushad
Journal:  Front Microbiol       Date:  2012-09-17       Impact factor: 5.640

Review 4.  Molecular evolution of hydrogen peroxide degrading enzymes.

Authors:  Marcel Zámocký; Bernhard Gasselhuber; Paul G Furtmüller; Christian Obinger
Journal:  Arch Biochem Biophys       Date:  2012-02-07       Impact factor: 4.013

5.  Multisubstrate isotope labeling and metagenomic analysis of active soil bacterial communities.

Authors:  Y Verastegui; J Cheng; K Engel; D Kolczynski; S Mortimer; J Lavigne; J Montalibet; T Romantsov; M Hall; B J McConkey; D R Rose; J J Tomashek; B R Scott; T C Charles; J D Neufeld
Journal:  MBio       Date:  2014-07-15       Impact factor: 7.867

6.  Metagenomic de novo assembly of an aquatic representative of the verrucomicrobial class Spartobacteria.

Authors:  Daniel P R Herlemann; Daniel Lundin; Matthias Labrenz; Klaus Jürgens; Zongli Zheng; Henrik Aspeborg; Anders F Andersson
Journal:  MBio       Date:  2013-05-28       Impact factor: 7.867

7.  Does the human placenta delivered at term have a microbiota? Results of cultivation, quantitative real-time PCR, 16S rRNA gene sequencing, and metagenomics.

Authors:  Kevin R Theis; Roberto Romero; Andrew D Winters; Jonathan M Greenberg; Nardhy Gomez-Lopez; Ali Alhousseini; Janine Bieda; Eli Maymon; Percy Pacora; Jennifer M Fettweis; Gregory A Buck; Kimberly K Jefferson; Jerome F Strauss; Offer Erez; Sonia S Hassan
Journal:  Am J Obstet Gynecol       Date:  2019-03       Impact factor: 10.693

8.  Forest-to-pasture conversion increases the diversity of the phylum Verrucomicrobia in Amazon rainforest soils.

Authors:  Kshitij Ranjan; Fabiana S Paula; Rebecca C Mueller; Ederson da C Jesus; Karina Cenciani; Brendan J M Bohannan; Klaus Nüsslein; Jorge L M Rodrigues
Journal:  Front Microbiol       Date:  2015-07-30       Impact factor: 5.640

9.  Soil bacterial communities shaped by geochemical factors and land use in a less-explored area, Tibetan Plateau.

Authors:  Xiangyu Guan; Jinfeng Wang; Hui Zhao; Jianjun Wang; Ximing Luo; Fei Liu; Fangqing Zhao
Journal:  BMC Genomics       Date:  2013-11-22       Impact factor: 3.969

10.  Riverine Bacterial Communities Reveal Environmental Disturbance Signatures within the Betaproteobacteria and Verrucomicrobia.

Authors:  John Paul Balmonte; Carol Arnosti; Sarah Underwood; Brent A McKee; Andreas Teske
Journal:  Front Microbiol       Date:  2016-09-15       Impact factor: 5.640
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