Literature DB >> 21451520

Single-cell genomics.

Tomer Kalisky1, Stephen R Quake.   

Abstract

Methods for genomic analysis at single-cell resolution enable new understanding of complex biological phenomena. Single-cell techniques, ranging from flow cytometry and microfluidics to PCR and sequencing, are used to understand the cellular composition of complex tissues, find new microbial species and perform genome-wide haplotyping.

Mesh：

Year:  2011        PMID： 21451520     DOI： 10.1038/nmeth0411-311

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


  33 in total

1.  Single-cell transcript analysis of pancreas development.

Authors:  Ming-Ko Chiang; Douglas A Melton
Journal:  Dev Cell       Date:  2003-03       Impact factor: 12.270

2.  Solving the "world-to-chip" interface problem with a microfluidic matrix.

Authors:  Jian Liu; Carl Hansen; Stephen R Quake
Journal:  Anal Chem       Date:  2003-09-15       Impact factor: 6.986

3.  Resolution of cell fate decisions revealed by single-cell gene expression analysis from zygote to blastocyst.

Authors:  Guoji Guo; Mikael Huss; Guo Qing Tong; Chaoyang Wang; Li Li Sun; Neil D Clarke; Paul Robson
Journal:  Dev Cell       Date:  2010-04-20       Impact factor: 12.270

4.  Gene expression profiling in single cells from the pancreatic islets of Langerhans reveals lognormal distribution of mRNA levels.

Authors:  Martin Bengtsson; Anders Ståhlberg; Patrik Rorsman; Mikael Kubista
Journal:  Genome Res       Date:  2005-10       Impact factor: 9.043

5.  Microfluidic digital PCR enables multigene analysis of individual environmental bacteria.

Authors:  Elizabeth A Ottesen; Jong Wook Hong; Stephen R Quake; Jared R Leadbetter
Journal:  Science       Date:  2006-12-01       Impact factor: 47.728

6.  Sequencing genomes from single cells by polymerase cloning.

Authors:  Kun Zhang; Adam C Martiny; Nikos B Reppas; Kerrie W Barry; Joel Malek; Sallie W Chisholm; George M Church
Journal:  Nat Biotechnol       Date:  2006-05-28       Impact factor: 54.908

7.  Gene expression profiles of laser-captured adjacent neuronal subtypes.

Authors:  L Luo; R C Salunga; H Guo; A Bittner; K C Joy; J E Galindo; H Xiao; K E Rogers; J S Wan; M R Jackson; M G Erlander
Journal:  Nat Med       Date:  1999-01       Impact factor: 53.440

8.  Whole-genome molecular haplotyping of single cells.

Authors:  H Christina Fan; Jianbin Wang; Anastasia Potanina; Stephen R Quake
Journal:  Nat Biotechnol       Date:  2010-12-19       Impact factor: 54.908

9.  Digital MDA for enumeration of total nucleic acid contamination.

Authors:  Paul C Blainey; Stephen R Quake
Journal:  Nucleic Acids Res       Date:  2010-11-11       Impact factor: 16.971

10.  Whole genome amplification and de novo assembly of single bacterial cells.

Authors:  Sébastien Rodrigue; Rex R Malmstrom; Aaron M Berlin; Bruce W Birren; Matthew R Henn; Sallie W Chisholm
Journal:  PLoS One       Date:  2009-09-02       Impact factor: 3.240
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  105 in total

1.  Building stem-cell genomics in California and beyond.

Authors:  Natalie D Dewitt; Michael P Yaffe; Alan Trounson
Journal:  Nat Biotechnol       Date:  2012-01-09       Impact factor: 54.908

2.  Microfluidic single-cell real-time PCR for comparative analysis of gene expression patterns.

Authors:  Veronica Sanchez-Freire; Antje D Ebert; Tomer Kalisky; Stephen R Quake; Joseph C Wu
Journal:  Nat Protoc       Date:  2012-04-05       Impact factor: 13.491

3.  Method for physiologic phenotype characterization at the single-cell level in non-interacting and interacting cells.

Authors:  Laimonas Kelbauskas; Shashanka P Ashili; Jeff Houkal; Dean Smith; Aida Mohammadreza; Kristen B Lee; Jessica Forrester; Ashok Kumar; Yasser H Anis; Thomas G Paulson; Cody A Youngbull; Yanqing Tian; Mark R Holl; Roger H Johnson; Deirdre R Meldrum
Journal:  J Biomed Opt       Date:  2012-03       Impact factor: 3.170

4.  Biosensors for immune cell analysis-A perspective.

Authors:  Alexander Revzin; Emanual Maverakis; H-C Chang
Journal:  Biomicrofluidics       Date:  2012-04-26       Impact factor: 2.800

5.  Uniform and accurate single-cell sequencing based on emulsion whole-genome amplification.

Authors:  Yusi Fu; Chunmei Li; Sijia Lu; Wenxiong Zhou; Fuchou Tang; X Sunney Xie; Yanyi Huang
Journal:  Proc Natl Acad Sci U S A       Date:  2015-09-04       Impact factor: 11.205

6.  Flow Homogenization Enables a Massively Parallel Fluidic Design for High-throughput and Multiplexed Cell Isolation.

Authors:  Chinchun Ooi; Christopher M Earhart; Casey E Hughes; Jung-Rok Lee; Dawson J Wong; Robert J Wilson; Rajat Rohatgi; Shan X Wang
Journal:  Adv Mater Technol       Date:  2020-03-18

Review 7.  New tools and new biology: recent miniaturized systems for molecular and cellular biology.

Authors:  Morgan Hamon; Jong Wook Hong
Journal:  Mol Cells       Date:  2013-12-02       Impact factor: 5.034

Review 8.  Systems-level analysis of innate immunity.

Authors:  Daniel E Zak; Vincent C Tam; Alan Aderem
Journal:  Annu Rev Immunol       Date:  2014       Impact factor: 28.527

9.  Development of a single-cell X-ray fluorescence flow cytometer.

Authors:  Andrew M Crawford; Patrick Kurecka; Tsz Kwan Yim; Claire Kozemchak; Aniruddha Deb; Lubomír Dostál; Cheng Jun Sun; Dale L Brewe; Raul Barrea; James E Penner-Hahn
Journal:  J Synchrotron Radiat       Date:  2016-06-17       Impact factor: 2.616

10.  Mass Spectrometry Measurement of Single Suspended Cells Using a Combined Cell Manipulation System and a Single-Probe Device.

Authors:  Shawna J Standke; Devon H Colby; Ryan C Bensen; Anthony W G Burgett; Zhibo Yang
Journal:  Anal Chem       Date:  2019-01-18       Impact factor: 6.986
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