Literature DB >> 21448225

The spatial and temporal organization of ubiquitin networks.

Caroline Grabbe1, Koraljka Husnjak, Ivan Dikic.   

Abstract

In the past decade, the diversity of signals generated by the ubiquitin system has emerged as a dominant regulator of biological processes and propagation of information in the eukaryotic cell. A wealth of information has been gained about the crucial role of spatial and temporal regulation of ubiquitin species of different lengths and linkages in the nuclear factor-κB (NF-κB) pathway, endocytic trafficking, protein degradation and DNA repair. This spatiotemporal regulation is achieved through sophisticated mechanisms of compartmentalization and sequential series of ubiquitylation events and signal decoding, which control diverse biological processes not only in the cell but also during the development of tissues and entire organisms.

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Year:  2011        PMID: 21448225      PMCID: PMC3654194          DOI: 10.1038/nrm3099

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   94.444


  145 in total

1.  Gradients of a ubiquitin E3 ligase inhibitor and a caspase inhibitor determine differentiation or death in spermatids.

Authors:  Yosef Kaplan; Liron Gibbs-Bar; Yossi Kalifa; Yael Feinstein-Rotkopf; Eli Arama
Journal:  Dev Cell       Date:  2010-07-20       Impact factor: 12.270

Review 2.  The diversity of ubiquitin recognition: hot spots and varied specificity.

Authors:  Jason M Winget; Thibault Mayor
Journal:  Mol Cell       Date:  2010-06-11       Impact factor: 17.970

Review 3.  Ubiquitin signalling in DNA replication and repair.

Authors:  Helle D Ulrich; Helen Walden
Journal:  Nat Rev Mol Cell Biol       Date:  2010-06-16       Impact factor: 94.444

4.  CK2 and GSK3 phosphorylation on S29 controls wild-type ATXN3 nuclear uptake.

Authors:  V Pastori; E Sangalli; P Coccetti; C Pozzi; S Nonnis; G Tedeschi; P Fusi
Journal:  Biochim Biophys Acta       Date:  2010-03-27

Review 5.  Membrane budding and scission by the ESCRT machinery: it's all in the neck.

Authors:  James H Hurley; Phyllis I Hanson
Journal:  Nat Rev Mol Cell Biol       Date:  2010-06-30       Impact factor: 94.444

6.  SHARPIN is a component of the NF-κB-activating linear ubiquitin chain assembly complex.

Authors:  Fuminori Tokunaga; Tomoko Nakagawa; Masaki Nakahara; Yasushi Saeki; Masami Taniguchi; Shin-ichi Sakata; Keiji Tanaka; Hiroyasu Nakano; Kazuhiro Iwai
Journal:  Nature       Date:  2011-03-31       Impact factor: 49.962

7.  Linear ubiquitination prevents inflammation and regulates immune signalling.

Authors:  Björn Gerlach; Stefanie M Cordier; Anna C Schmukle; Christoph H Emmerich; Eva Rieser; Tobias L Haas; Andrew I Webb; James A Rickard; Holly Anderton; Wendy W-L Wong; Ueli Nachbur; Lahiru Gangoda; Uwe Warnken; Anthony W Purcell; John Silke; Henning Walczak
Journal:  Nature       Date:  2011-03-31       Impact factor: 49.962

8.  SHARPIN forms a linear ubiquitin ligase complex regulating NF-κB activity and apoptosis.

Authors:  Fumiyo Ikeda; Yonathan Lissanu Deribe; Sigrid S Skånland; Benjamin Stieglitz; Caroline Grabbe; Mirita Franz-Wachtel; Sjoerd J L van Wijk; Panchali Goswami; Vanja Nagy; Janos Terzic; Fuminori Tokunaga; Ariadne Androulidaki; Tomoko Nakagawa; Manolis Pasparakis; Kazuhiro Iwai; John P Sundberg; Liliana Schaefer; Katrin Rittinger; Boris Macek; Ivan Dikic
Journal:  Nature       Date:  2011-03-31       Impact factor: 49.962

9.  Balanced ubiquitylation and deubiquitylation of Frizzled regulate cellular responsiveness to Wg/Wnt.

Authors:  Akiko Mukai; Miki Yamamoto-Hino; Wakae Awano; Wakako Watanabe; Masayuki Komada; Satoshi Goto
Journal:  EMBO J       Date:  2010-05-21       Impact factor: 11.598

Review 10.  Atypical ubiquitin chains: new molecular signals. 'Protein Modifications: Beyond the Usual Suspects' review series.

Authors:  Fumiyo Ikeda; Ivan Dikic
Journal:  EMBO Rep       Date:  2008-06       Impact factor: 8.807

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  157 in total

1.  Comparison of native and non-native ubiquitin oligomers reveals analogous structures and reactivities.

Authors:  Grace H Pham; Ambar S J B Rana; E Nihal Korkmaz; Vivian H Trang; Qiang Cui; Eric R Strieter
Journal:  Protein Sci       Date:  2016-01-12       Impact factor: 6.725

2.  A20 suppresses vascular inflammation by recruiting proinflammatory signaling molecules to intracellular aggresomes.

Authors:  Karine Enesa; Herwig P Moll; Le Luong; Christiane Ferran; Paul C Evans
Journal:  FASEB J       Date:  2015-02-09       Impact factor: 5.191

3.  Innate immunity: regulation of caspases by IAP-dependent ubiquitylation.

Authors:  Christina Falschlehner; Michael Boutros
Journal:  EMBO J       Date:  2012-05-15       Impact factor: 11.598

4.  Breaking the limits of artificial ubiquitination.

Authors:  Mateusz Putyrski; Ivan Dikic
Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-18       Impact factor: 11.205

5.  Secondary ubiquitin-RING docking enhances Arkadia and Ark2C E3 ligase activity.

Authors:  Joshua D Wright; Peter D Mace; Catherine L Day
Journal:  Nat Struct Mol Biol       Date:  2015-12-14       Impact factor: 15.369

6.  The ubiquitin-associated domain of cellular inhibitor of apoptosis proteins facilitates ubiquitylation.

Authors:  Rhesa Budhidarmo; Catherine L Day
Journal:  J Biol Chem       Date:  2014-07-26       Impact factor: 5.157

7.  Conformational flexibility and rotation of the RING domain in activation of cullin-RING ligases.

Authors:  Simin Rahighi; Ivan Dikic
Journal:  Nat Struct Mol Biol       Date:  2011-08-03       Impact factor: 15.369

8.  Healthy ageing through regulated proteostasis.

Authors:  Krishnaraj Rajalingam; Ivan Dikic
Journal:  EMBO J       Date:  2011-08-03       Impact factor: 11.598

9.  Single-Base Resolution Mapping of 5-Hydroxymethylcytosine Modifications in Hippocampus of Alzheimer's Disease Subjects.

Authors:  Elizabeth M Ellison; Melissa A Bradley-Whitman; Mark A Lovell
Journal:  J Mol Neurosci       Date:  2017-09-02       Impact factor: 3.444

10.  Spg5 protein regulates the proteasome in quiescence.

Authors:  John Hanna; David Waterman; Monica Boselli; Daniel Finley
Journal:  J Biol Chem       Date:  2012-08-17       Impact factor: 5.157

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