Literature DB >> 21447431

Using the TOPS-MODE approach to fit multi-target QSAR models for tyrosine kinases inhibitors.

Giovanni Marzaro1, Adriana Chilin, Adriano Guiotto, Eugenio Uriarte, Paola Brun, Ignazio Castagliuolo, Francesca Tonus, Humberto González-Díaz.   

Abstract

Tyrosine kinases constitute an eligible class of target for novel drug discovery. They resulted often overexpressed and/or deregulated in several cancer diseases. Thus, the development of novel tyrosine kinases inhibitors is of value, as well as the finding of novel cheminformatic tools for their design. Among the different ways to rationally design novel compounds, the Quantitative Structure-Activity Relationship (QSAR) plays a key role. The QSAR approach, in fact, allow the prediction of activity against a number of targets (multi-target QSAR), thus leading to models able to predict not only the activity of a compound, but also its selectivity versus a set of targets. Despite it is well known that tyrosine kinase inhibitors have to show multi-kinases inhibitory potency to be useful in anticancer therapy, only few multi-target computational tools have been developed to help medicinal chemists in the design of novel compounds. Herein we present the development of several multi-target classification QSAR (mtc-QSAR) models useful to assess the activity profile of the tyrosine kinases inhibitors.
Copyright © 2011 Elsevier Masson SAS. All rights reserved.

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Year:  2011        PMID: 21447431     DOI: 10.1016/j.ejmech.2011.02.072

Source DB:  PubMed          Journal:  Eur J Med Chem        ISSN: 0223-5234            Impact factor:   6.514


  11 in total

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Authors:  Gerardo M Casañola-Martin; Huong Le-Thi-Thu; Facundo Pérez-Giménez; Yovani Marrero-Ponce; Matilde Merino-Sanjuán; Concepción Abad; Humberto González-Díaz
Journal:  Mol Divers       Date:  2015-03-10       Impact factor: 2.943

3.  Autogrid-based clustering of kinases: selection of representative conformations for docking purposes.

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Journal:  Mol Divers       Date:  2014-05-29       Impact factor: 2.943

4.  Model for high-throughput screening of multitarget drugs in chemical neurosciences: synthesis, assay, and theoretic study of rasagiline carbamates.

Authors:  Nerea Alonso; Olga Caamaño; Francisco J Romero-Duran; Feng Luan; M Natália D S Cordeiro; Matilde Yañez; Humberto González-Díaz; Xerardo García-Mera
Journal:  ACS Chem Neurosci       Date:  2013-07-29       Impact factor: 4.418

5.  PTML modeling for peptide discovery: in silico design of non-hemolytic peptides with antihypertensive activity.

Authors:  Valeria V Kleandrova; Julio A Rojas-Vargas; Marcus T Scotti; Alejandro Speck-Planche
Journal:  Mol Divers       Date:  2021-11-21       Impact factor: 3.364

6.  Prediction of multi-target networks of neuroprotective compounds with entropy indices and synthesis, assay, and theoretical study of new asymmetric 1,2-rasagiline carbamates.

Authors:  Francisco J Romero Durán; Nerea Alonso; Olga Caamaño; Xerardo García-Mera; Matilde Yañez; Francisco J Prado-Prado; Humberto González-Díaz
Journal:  Int J Mol Sci       Date:  2014-09-24       Impact factor: 5.923

7.  Construction of Quantitative Structure Activity Relationship (QSAR) Models to Predict Potency of Structurally Diversed Janus Kinase 2 Inhibitors.

Authors:  Saw Simeon; Nathjanan Jongkon
Journal:  Molecules       Date:  2019-12-01       Impact factor: 4.411

8.  PTML Modeling for Pancreatic Cancer Research: In Silico Design of Simultaneous Multi-Protein and Multi-Cell Inhibitors.

Authors:  Valeria V Kleandrova; Alejandro Speck-Planche
Journal:  Biomedicines       Date:  2022-02-18

Review 9.  Machine learning approaches and databases for prediction of drug-target interaction: a survey paper.

Authors:  Maryam Bagherian; Elyas Sabeti; Kai Wang; Maureen A Sartor; Zaneta Nikolovska-Coleska; Kayvan Najarian
Journal:  Brief Bioinform       Date:  2021-01-18       Impact factor: 11.622

10.  Model for vaccine design by prediction of B-epitopes of IEDB given perturbations in peptide sequence, in vivo process, experimental techniques, and source or host organisms.

Authors:  Humberto González-Díaz; Lázaro G Pérez-Montoto; Florencio M Ubeira
Journal:  J Immunol Res       Date:  2014-01-12       Impact factor: 4.818

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