Biomarkers in the diagnosis of lysosomal storage disorders: proteins, lipids, and inhibodies.

A biomarker is an analyte indicating the presence of a biological process linked to the clinical manifestations and outcome of a particular disease. In the case of lysosomal storage disorders (LSDs), primary and secondary accumulating metabolites or proteins specifically secreted by storage cells are good candidates for biomarkers. Clinical applications of biomarkers are found in improved diagnosis, monitoring disease progression, and assessing therapeutic correction. These are illustrated by reviewing the discovery and use of biomarkers for Gaucher disease and Fabry disease. In addition, recently developed chemical tools allowing specific visualization of enzymatically active lysosomal glucocerebrosidase are described. Such probes, coined inhibodies, offer entirely new possibilities for more sophisticated molecular diagnosis, enzyme replacement therapy monitoring, and fundamental research.

Introduction

Lysosomal storage disorders

Continuous recycling of their macromolecular constituents is essential for the functional integrity of long-lived cells. This molecular rejuvenation depends not only on permanent biosynthesis but also on permanent degradation of macromolecules. To handle the potential risky turnover of macromolecular constituents, hydrolytic processes are largely contained in specific acid subcellular compartments named lysosomes (lysein = cleave, somos = body) by their discoverer Christian de Duve (de Duve et al. 1955). Henri G. Hers ( 1963)first realized that deficiency of a particular lysosomal enzyme (acid alpha-glucosidase) was the cause of glycogen storage disease type 2, also called Pompe disease. This discovery led to the concept of lysosomal storage disorders (LSDs), of which more than 70 have now been described. The birth prevalence of individual LSDs is thought to vary between 1 in 20,000–100,000 live births. Collectively, the entire group of LSDs affects at least 1 in 5,000–10,000 live births (Meikle et al. 1999; Poorthuis et al. 1999). Lysosomal storage disorders may present with a broad range of phenotypes, with variable age of onset, symptom severity, and degree of central nervous system (CNS) involvement. Many LSDs manifest as a spectrum encompassing more severe (infantile) and milder (juvenile and adult) forms. Infantile forms often display CNS involvement and are therefore called neuronopathic, in contrast to the non-neuronopathic subtypes. For instance, in Gaucher disease (beta-glucocerebrosidase deficiency), the most severe phenotype presents with severe neurological involvement and death soon after birth, whereas at the other end of the phenotypic spectrum, patients are found in whom diagnosis is made in late adulthood based on minimal visceral symptoms (Aerts et al. 1993).

LSD therapy

In recent decades, remarkable progress has been made in LSD treatment. The general principle of treatment is lowering the excessive amount of stored substrate, which can be achieved either by enhanced substrate degradation or by reduced substrate production. Enhanced substrate degradation can be achieved by two different approaches. First, hematopoietic cell transplantation (HCT) with cells from unaffected individuals can deliver the missing enzyme to the deficient cells of the recipient. HCT has been used in an attempt to treat numerous different LSDs, but to now, it has only been proven effective in a small number of disorders (see Boelens et al. 2010 for a review). The second approach to enhance substrate degradation is by direct intravenous delivery of the deficient enzyme, which may partly restore the deficient enzymatic capacity. This concept, named enzyme replacement therapy (ERT), is based on the principle that lysosomal proteins can reach the subcellular lysosomes via endocytosis mediated by lectins on the plasma membrane, such as the mannose 6-phosphate receptor and the mannose receptor. Gaucher disease was the first LSD for which this type of treatment became available. The first enzyme preparation used to treat non-neuronopathic type 1 Gaucher disease consisted of placenta-derived glucocerebrosidase with modified, mannose-terminated glycans, allowing more selective uptake by tissue macrophages that are the prominent storage cells in Gaucher disease (Barton et al. 1991; Hollak et al. 1995; Bijsterbosch et al. 1996). This product was later replaced by recombinant enzyme (Cerezyme; Genzyme), which proved to be very successful in treating the visceral and bone complications of Gaucher disease (de Fost et al. 2007; Pastores et al. 2004). Very recently, an alternative recombinant enzyme preparation (Velaglucerase alfa; Shire), produced in human cells, was registered for ERT of type 1 Gaucher disease (Aerts et al. 2010). An exciting new development forms the production of recombinant glucocerebrosidase by Protalix in plant cells (Aviezer et al. 2009). The plant-derived recombinant enzyme preparation (named taliglucerase alfa) is hoped to be comparatively effective and increase the choice between treatment modalities (Aviezer et al. 2009). A third and more recent development, also aimed at enhancing substrate degradation, is the use of small compounds that act as chaperones for mutant enzymes (see Smid et al. 2010 for a recent review). Whereas the above-mentioned therapeutic approaches are based on stimulating the breakdown of the accumulated substrate, an alternative strategy is aimed at decreasing the amount of substrate by partially inhibiting its synthesis. This approach, requiring well-tolerated and specific enzymatic inhibitors, is named substrate reduction therapy (SRT). The most well-known and studied compound that acts by SRT is a glucosylceramide synthase inhibitor, N-butyldeoxynojirimycin (miglustat), which catalyses the first step in the glucosylceramide biosynthetic pathway (Platt et al. 2001; Aerts et al. 2006). Miglustat has been extensively studied for its use in Gaucher disease type 1and is registered for patients with mild to moderate Gaucher disease type 1 who are unable or unwilling to receive ERT (Cox et al. 2000, 2003). The long-term experience with miglustat treatment in type 1 Gaucher patients is satisfactory (Elstein et al. 2004; Heitner et al. 2002; Elstein et al. 2007), and anecdotal reports suggest that combination SRT and ERT may be beneficial for some type 3 neuronopathic Gaucher patients (Cox-Brinkman et al. 2008). The development of an alternative small-molecule compound for oral substrate reduction therapy, eliglustat tartrate, by Genzyme is also exciting (McEachern et al. 2007). The compound seems to be safe and well tolerated (Lukina et al. 2010b), and a 2-year follow-up of a phase II trial indicated major improvements in hematological, visceral, and skeletal manifestations in adult patients with type 1 Gaucher disease on a par with ERT (Lukina et al. 2010a). Moreover, as ERT is not able to prevent or treat neurological abnormalities in severely affected patients because the enzymes are unable to pass the blood–brain barrier (Schiffmann et al. 1997), such compounds could provide a much needed treatment option for these patients. Another approach being studied for treating CNS disease is direct introduction of the deficient enzyme into the brain (Lonser et al. 2005; Begley 2004; Dickson et al. 2007). Alternative strategies to deliver modified enzymes from the circulation across the blood–brain barrier are also being investigated (Begley 2004; Urayama et al. 2007). The preclinical therapeutic approach remains gene therapy. Numerous hurdles, such as transient expression of transgenes, immunological responses, and tumor induction, have so far discouraged the clinical application of gene therapy. However, as in recent years enormous progress has been made with respect to efficacy and safety of viral vectors, with encouraging results in application in animal models for LSDs, there is still great hope for application of gene therapy (Fig. 1).

Fig. 1

Gaucher cell accumulating the glycosphingolipid glucosylceramide and specifically secreting the biomarker chitotriosidase that can be detected in plasma. Example of corrections in plasma chitotriosidase in Gaucher disease patients receiving enzyme replacement therapy

Monitoring disease manifestations and therapeutic intervention

Accurate quantitative monitoring of disease manifestations as well as of the therapeutic efficacy of any type of treatment is crucial for clinical management of patients with LSDs. Disease onset and progression can be monitored by clinical, radiological, and laboratory assessments. Clinical assessments obviously differ among the various LSDs, as illustrated below for Gaucher disease and Fabry disease. In practice, clinical therapeutic efficacy is often difficult to assess, as organ involvement can sometimes not be quantitatively assessed and is highly variable among patients. Moreover, some symptoms have an irreversible nature, such as advanced renal failure in Fabry disease or bone infarctions in Gaucher disease. Increasingly, disease-specific biochemical abnormalities are used to monitor disease progression and treatment efficacy for LSDs.

Biomarkers

Biomarkers are generally defined as chemical entities, ranging from simple metabolites to complex proteins, which indicate the presence of a biological process linked to the clinical manifestations and outcome of a particular disease. The value of biomarkers is appreciated by most clinicians and biomedical researchers as well as the authorities. In a recent report on biomarkers, the European Medicines Agency (EMA) states that: “Biomarkers play an increasingly important role in the development of new drugs. It is expected that they will help increase the rate of success of new developments and to expedite the development of drugs. Also, biomarkers are key in the shift away from the ‘one size fits all’ to ‘the right drug at the right dose in the right patient’ approach. Hence, biomarkers play an important role for scientists and industry in drug development and for regulators in the approval process” (EMA 2006). To date, biomarkers are already widely used in the clinical management of some conditions. An obvious example is the measurement of blood glucose and/or glycosylated hemoglobin in diabetic individuals. Candidate biomarkers for LSDs can be divided into two categories. The first group consists of molecules that accumulate in tissues and body fluids directly due to the enzymatic defect. The second group includes molecules produced by storage cells in a specific LSD and can be measured either in plasma, urine, or cerebrospinal fluid (CSF). Identifying and applying such biomarkers for Gaucher disease and Fabry disease are discussed, and their use is illustrated.

Gaucher disease

A prominent LSD is Gaucher disease (Beutler et al. 2001; Aerts et al. 2003). Brady and co-workers first showed that the primary defect in Gaucher disease is a marked deficiency in activity of the lysosomal enzyme glucocerebrosidase (Brady et al. 1966). Deficiencies in glucocerebrosidase result in accumulation of its lipid substrate glucosylceramide in the lysosomal compartment of macrophages throughout the body. Different phenotypes (types 1, 2, and 3) are generally recognized and are differentiated on the basis of the presence or absence of neurological symptoms. Whether a strict division in three different phenotypes is still valid has been the subject of debate, as there are an increasing number of reports on neurological manifestations in patients with type 1 Gaucher disease. However, the neurological signs and symptoms in type 1 Gaucher disease are of a totally different kind from and, in the majority of cases, of much less severity than, the signs and symptoms associated with types 2 and 3 disease (Biegstraaten et al. 2008). It has also become apparent that complete deficiencies in glucocerebrosidase activity occur, resulting in major skin permeability abnormalities with lethal consequences either prenatally or shortly after birth (Sidransky 2004). The most common Gaucher phenotype is non-neuronopathic type 1 manifestation, with a highly variable age of onset and severity. Even spontaneous disease regression has been observed in some relatively mildly affected type 1 Gaucher patients (Boomsma et al. 2010). Characteristic symptoms include splenomegaly with anemia and thrombocytopenia, hepatomegaly, and bone disease. Anemia may contribute to chronic fatigue. Thrombocytopenia and prolonged clotting times can lead to an increased bleeding tendency. Atypical bone pain, pathological fractures, avascular necrosis, and extremely painful bone crises may also have a great impact on quality of life. Gammopathies and metabolic abnormalities such as insulin resistance and lipoprotein abnormalities are encountered in type 1 Gaucher patients (Langeveld et al. 2007, 2008b; Wennekes et al. 2009; de Fost et al. 2009, 2008). Type 1 Gaucher disease is relatively common in all ethnic groups. It is prevalent among Ashkenazi Jews, with a carrier frequency as high as about 1 in 15 and an incidence of about 1 in 1,000. The most common mutation in the glucocerebrosidase gene of Caucasians, including Ashkenazi Jews, encodes the amino acid substitution N370S. The heteroallelic presence of the N370S mutation is always associated with a non-neuronopathic course (Ohashi et al. 1991; van Weely et al. 1993b). Some, but not all, homozygotes for the N370S mutation develop significant clinical symptoms (Beutler et al. 2001; Aerts et al. 2003). Twin studies and the poor predictive power of genotype–phenotype investigations in Gaucher disease have clearly pointed out that epigenetic factors also play a key role in Gaucher disease manifestation (Biegstraaten et al. 2010).

The diagnosis of Gaucher disease can be confirmed by demonstration of reduced glucocerebrosidase activity in lysates of various cell types and even urine samples using the fluorogenic substrate 4-methylumbelliferyl beta-glucoside (Aerts et al. 1985, 1986b). Fluorescent analogues of the lipid glucosylceramide can be exploited to measure glucocerebrosidase activity in cultured cells (Van Weely et al. 1991). Highly specific monoclonal antibodies against human glucocerebrosidase have been produced and can be used in purification of the protein, Western blot analysis, and microscopy techniques (Aerts et al. 1986a, 1988). Although glucocerebrosidase is present in the lysosomes of all cell types, patients with type 1 Gaucher disease only store glucosylceramide in macrophages. It is believed that the storage material stems from the breakdown of exogenous lipids derived from the turnover of blood cells. The glucosylceramide-loaded macrophages of Gaucher patients show a characteristic morphology with a wrinkled-paper appearance of their cytoplasm, which contains lysosomal inclusion bodies; these cells are referred to as Gaucher cells. In recent decades, it has become apparent that Gaucher cells are not inert containers of storage material but are viable, chronically activated macrophages that contribute to the diverse clinical manifestations of Gaucher disease. These mature, activated macrophages are surrounded by newly formed, highly inflammatory macrophages in tissue lesions of patients with Gaucher disease (Boven et al. 2004). Consistent with these observations, patients with Gaucher disease show increased plasma levels of several proinflammatory and anti-inflammatory cytokines, chemokines, and hydrolases (Aerts and Hollak 1997; Aerts et al. 2008a; Hollak et al. 1997b; Michelakakis et al. 1996; Hollak et al. 1997a; Møller et al. 2004). Factors released by Gaucher cells and surrounding macrophages are thought to play a crucial role in the development of common abnormalities in Gaucher patients, such as osteopenia, activation of coagulation, hypermetabolism, gammopathies, multiple myeloma, and hypolipoproteinemias (Aerts and Hollak 1997).

Biomarkers of Gaucher cells

Given the prominent role of Gaucher cells in the pathophysiology of the disorder, considerable attention has been focused on identifying plasma markers for such macrophages. Abnormalities in levels of tartrate-resistant acid phosphatase (TRAP), angiotensin-converting enzyme (ACE), hexosaminidase, and lysozyme in serum samples from Gaucher patients had been documented for some time (Aerts and Hollak 1997). More recently, increased plasma levels of various cathepsins, including cathepsin K, were reported in patients with Gaucher disease (Moran et al. 2000; van Breemen et al. 2008). All of these proteins are known to be produced by macrophages; however, none of them appears to be a specific marker for the pathological Gaucher cells, and their levels in the serum of symptomatic patients with Gaucher disease may overlap with those observed in healthy individuals. Their use as biomarkers for Gaucher cells is, therefore, restricted. The need for a very sensitive and specific marker for Gaucher cells prompted a search for such a parameter. This search led to the discovery of a striking abnormality in the serum of symptomatic patients with Gaucher disease.

Chitotriosidase

Serum from such individuals showed a 1,000-fold increased capacity to degrade the fluorogenic substrate 4-methylumbelliferyl chitotrioside (Hollak et al. 1994). The corresponding enzyme had hitherto not been described and was named chitotriosidase. The chitotriosidase protein was subsequently purified and its complementary DNA (cDNA) cloned (Renkema et al. 1995; Boot et al. 1995). Chitotriosidase was found to be the human analogue of chitinases from lower organisms (Rao et al. 2005). The enzyme hydrolyzes chitin, the natural polymer of beta-1,4 N-acetylglucosamine, is a member of the large chitinase protein family created by gene duplications (Bussink et al. 2007). Besides chitotriosidase, the chitinase protein family includes one other active enzyme—AMCase (Boot et al. 2001)—and several inactive lectins (Bussink et al. 2007; Renkema et al. 1998). Chitotriosidase is specifically expressed by phagocytes in humans, including macrophages and neutrophils (Renkema et al. 1997; van Eijk et al. 2005). The enzyme is similar in structure to nonvertebrate chitinases (Fusetti et al. 2002; Rao et al. 2003). It has been shown to exert a fungistatic action of degradation of the protective chitin layer at the hyphal tip of fungi (van Eijk et al. 2005). In situ hybridization and histochemistry of bone marrow aspirates and sections of spleens from patients with Gaucher disease revealed that chitotriosidase is massively produced by storage cells. This is also supported by the close linear relationship between chitotriosidase and glucosylceramide levels in different spleen sections from patients with Gaucher disease (Bussink et al. 2006). In a culture model of Gaucher cells, chitotriosidase accounts for almost 10% of the total secreted protein. In sharp contrast, common tissue macrophages do not produce chitotriosidase. These observations help us to understand the very specific, gross elevation of chitotriosidase levels in the blood of patients with Gaucher disease. A relationship between the total body burden of storage cells in patients with Gaucher disease and their plasma chitotriosidase levels has been noted. The plasma chitotriosidase level does not reflect any one particular clinical symptom of Gaucher disease, suggesting, rather, that it reflects the sum of secreted enzyme by Gaucher cells in various body locations. Plasma chitotriosidase levels can be determined by monitoring hydrolysis of the fluorogenic substrate 4-methylumbelliferyl-chitobioside. However, the ability of chitotriosidase to transglycosylate as well as hydrolyze this substrate complicates the enzyme assay (Aguilera et al. 2003). Special care has to be taken to ensure that the enzyme activity is truly proportional to the amount of chitotriosidase protein. A far more convenient, sensitive, and accurate detection is feasible by measuring the activity of chitotriosidase toward the recently designed fluorogenic substrate 4-methylumbelliferyl-deoxy-chitotrioside (Aguilera et al. 2003; Schoonhoven et al. 2007). Interpretation of plasma chitotriosidase levels is intrinsically complicated by the common occurrence of a particular 24-base-pair duplication in the chitotriosidase gene, preventing the formation of chitotriosidase protein (Aguilera et al. 1998). In most ethnic groups, about one in every three individuals carries this abnormality, and about one in every 20 individuals, including patients with Gaucher disease, is homozygous for this trait (Aguilera et al. 1998). It has been established that carriers of the 24-bp duplication show half the amount of plasma chitotriosidase detected in individuals with the wild-type chitotriosidase genotype (Aguilera et al. 1998). It is therefore common to correct plasma chitotriosidase by a factor of two when examining patients with Gaucher disease who are carriers of the 24-bp duplication. Other polymorphisms have also been detected, of which the G102S substitution is the most frequent (allele frequency of about 0.25). This polymorphism leads to an enzyme with a slightly impaired catalytic activity toward the 4-methylumbelliferyl-chitotrioside substrate compared with wild type. However, G102S enzyme activity is normal when using 4-methylumbelliferyl-deoxy-chitobioside as substrate (Bussink et al. 2009). It should be mentioned that increased plasma chitotriosidase activity is not unique for Gaucher patients. Plasma chitotriosidase activity is increased, albeit much more modestly, in several lysosomal and nonlysosomal diseases, such as sarcoidosis, visceral Leishmaniasis, leprosy, arthritis, multiple sclerosis, thalassemia, chronic obstructive pulmonary disease (COPD), malaria, and atherosclerosis (Hollak et al. 1994; Guo et al. 1995; Brinkman et al. 2005; vom Dahl et al. 1999; Vedder et al. 2006a; Boot et al. 2010; Iyer et al. 2009; Boven et al. 2006; Boot et al. 1999; Labadaridis et al. 1998).

PARC/CCL18

The high frequency of chitotriosidase deficiency prompted us to search for an alternative marker of Gaucher cells. Using surface-enhanced laser distortion/ionization time of flight (SELDI-TOF) mass spectrometric analyses, we discovered massive overproduction and secretion by Gaucher cells of the pulmonary and activation-regulated chemokine (PARC/CCL18), of which the messenger RNA (mRNA) was previously observed to be up-regulated in the spleen of a patient with Gaucher disease (Moran et al. 2000; Boot et al. 2004). This plasma PARC/CCL18 cannot be reliably quantified using SELDI-TOF, but reliable quantification is obtained by ELISA (van Breemen et al. 2006). Plasma PARC/CCL18 levels are 10- to 40-fold elevated in symptomatic Gaucher patients (Boot et al. 2004; Deegan et al. 2005). Due to its basic nature and small molecular mass, PARC/CCL18 levels in urine are proportional to those in the circulation. Therefore, urinary PARC/CCL18 excretion offers insight into the body burden of Gaucher cells (Boot et al. 2006). Measurement of plasma PARC/CCL18 has been found to yield an excellent additional tool to monitor changes in body burden of Gaucher cells. It is particularly useful for evaluating patients that are chitotriosidase deficient (Cox et al. 2008).

MIP-1α and MIP-1β

Van Breemen and co-workers reported markedly elevated levels of the chemokines macrophage inflammatory protein (MIP)-1α and MIP-1β in plasma of symptomatic Gaucher patients (van Breemen et al. 2007). Interestingly, with immunohistochemistry, these proteins were found to be produced by surrounding inflammatory spleen macrophages and not by mature Gaucher cells (van Breemen et al. 2007). The different cellular source is also reflected in the observation that plasma chitotriosidase and PARC/CCL18, both stemming from Gaucher cells, respond comparably to ERT. However, corrections in plasma MIP-1α and MIP-1β following ERT are not proportional to those found with the true Gaucher-cell biomarkers (van Breemen et al. 2009). A relationship was observed between plasma MIP-1β and skeletal disease: stable high plasma MIP-1β levels despite prolonged ERT were found to correlate with ongoing skeletal disease (van Breemen et al. 2007). Clearly, rigorous analysis of a large cohort of Gaucher patients is required to establish the value of plasma MIP-1β (or MIP-1α) as biomarker, especially its value as prognostic marker for skeletal response to therapy.

Clinical applications of Gaucher-cell biomarkers

Plasma chitotriosidase measurement is commonly employed as a first screen in the diagnosis of Gaucher disease. Increasing plasma levels seem to reflect gradual accumulation of storage cells in the patient’s body. In an attempt to assess the utility of plasma chitotriosidase activity measurement as a biomarker for treatment efficacy, Hollak and co-workers investigated the relationship between enzyme activity and clinical parameters (Hollak et al. 2001). In patients with high clinical severity scores, chitotriosidase levels were usually >20,000 nmol/ml/h and always >15,000 nmol/ml/h, whereas patients with less severe disease tended to have lower values. During enzyme supplementation therapy, the mean decrease in 12 months was 32% (range 0–82%), and 78% of patients had a decrease of >15%. In six patients with a decrease in chitotriosidase activity of <15%, the clinical response to treatment was inferior to that of other patients, with less reduction in organomegaly in four and bone problems in two. In addition, chitotriosidase response was related to disease severity; less reduction in plasma activity was seen in more severely affected individuals. On the basis of this investigation, it has been proposed that in patients in whom the initiation of treatment is questionable based solely on clinical parameters, a chitotriosidase activity >15,000 nmol/ml/h may serve as an indicator of a high Gaucher-cell burden and an indication for treatment initiation (Hollak et al. 2001). A reduction in chitotriosidase activity of <15% after 12 months of treatment, in combination with an insufficient response of at least one clinical parameter, should be a reason to consider dose increase. Furthermore, a sustained increase in chitotriosidase at any point during treatment should alert the physician to the possibility of clinical deterioration and the need for dose adjustment. A recent retrospective analysis by Deegan and co-workers confirmed the value of the use of plasma chitotriosidase in Gaucher disease management and presented evidence for comparable use of PARC/CCL18 (Deegan et al. 2005). In conclusion, next to radiological monitoring of the bone marrow and skeleton (Maas et al. 2002, 2003; Poll et al. 2002), measurement of plasma levels of chitotriosidase and/or PARC/CCL18 offers valuable information for clinical management of type 1 Gaucher patients.

Lipid biomarkers of Gaucher disease

Increased plasma concentrations of glucosylceramide, the primary storage lipid, have been documented for Gaucher patients (Groener et al. 2008; Erikson et al. 2006). Plasma glucosylceramide is not used as a biomarker, as its increase generally is not very pronounced. Moreover, the exact relation between circulating glucosylceramide and storage cells in tissues is far from clear. Interestingly, besides glucosylceramide, the ganglioside GM3 is also elevated in Gaucher plasma samples (Ghauharali-van der Vlugt et al. 2007). Increases of GM3 have also been noted in spleens of Gaucher patients. This secondary elevation of GM3 may not be without consequences. Elevated glycosphingolipids such as GM3 are thought to cause insulin resistance (Aerts et al. 2007). Indeed, a recent study revealed that Gaucher patients are insulin resistant without overt hyperglycemia (Langeveld et al. 2008a; Langeveld and Aerts 2009). Other secondary lipid abnormalities in Gaucher patients have been noted by thorough investigations by Fuller and co-workers, such as elevated levels of phosphatidylglycerol (Hein et al. 2007; Meikle et al. 2008). The diagnostic value and possible physiological consequences warrant further investigations.

Discovery of additional protein biomarkers for Gaucher disease

Ongoing attention is paid to the detection of useful protein biomarkers for Gaucher disease by a thorough survey of protein composition of bodily fluids, or cell and tissue specimens of symptomatic Gaucher patients. The latter approach has more recently become feasible due to the availability of mass spectrometric techniques that allow accurate analysis of proteins, even in complex mixtures such as plasma and urine samples. Recently, label-free liquid chromatography mass spectrometry (LC-MS) quantification methods have been developed. These methods are typically based on determining peak–area ratios of the same peptides between different conditions. Using a label-free LC-MS approach (so-called LC-MSE), a series of plasma specimens from type 1 Gaucher patients prior to and after therapy were studied (Vissers et al. 2007). Marked therapy-induced differences were noted in the Gaucher disease protein plasma profile. Comparison with the normal plasma profile revealed that many protein abnormalities in symptomatic patients were at least partially corrected by successful therapy (Vissers et al. 2007). LC-MSE is used by us to study the proteome of laser-capture-dissected Gaucher cells from spleens of Gaucher patients.

Fabry disease

Fabry disease is an X-linked LSD resulting from deficient activity of the lysosomal hydrolase α-galactosidase A (EC 3.2.1.22) (Desnick and Ioannou 2001; Brady et al. 1967). In male patients with severe forms of Fabry disease, there is usually severely reduced or complete lack of enzymatic activity. Relatively high residual enzyme activity is often noted in patients with a milder variant of Fabry disease with predominantly cardiac abnormalities, whereas there is little or no kidney dysfunction and no painful acroparesthesia (Desnick and Ioannou 2001). However, many female heterozygotes also display symptoms despite considerable amounts of circulating residual enzyme that varies due to random X inactivation. This sharply contrasts with the general lack of symptoms among carriers of another X-linked lysosomal hydrolase deficiency, Hunter disease. Deficiency of α-galactosidase A results in accumulation of its glycosphingolipid substrates in lysosomes of endothelial, perithelial, and smooth-muscle cells of the vascular system, as well as renal epithelial cells, myocardial cells, and cells of the autonomic nervous system. The accumulating glycosphingolipids contain terminal α-galactosyl moieties, such as globotriaosylceramide (Gb3; also known as ceramide trihexoside: CTH); galabiosylceramide (Gb2); and, to a lesser extent, blood group B, B1, and P1 antigens (Desnick and Ioannou 2001). Two different recombinant α-galactosidase A preparations are in use for treating Fabry disease (Schiffmann et al. 2001; Eng et al. 2001). One enzyme is produced by Chinese hamster ovary (CHO) cells with classic recombinant technology (agalsidase β, Fabrazyme), and the other enzyme is produced by cultured human skin fibroblasts with an activated promoter of the α-gal A gene (agalsidase α, Replagal). Both recombinant enzymes are quite comparable in properties and differ only slightly in glycan composition (Blom et al. 2003). The two enzyme preparations have independently been examined in clinical investigations and are both registered in Europe for treating Fabry patients. Although both enzyme therapies were found to result in the desired clearance of globotriaosylceramide from the endothelium, the clinical effects are not as robust as anticipated. In some patients, stabilization of renal function and improvement in cardiac hypertrophy occurs upon therapy, but a considerable number experiences progressive complications (Vedder et al. 2007a).

Numerous screening studies for Fabry disease have been undertaken and are ongoing (Linthorst et al. 2010). Some investigations rely on detection of abnormalities in the GLA gene. A serious complication in this connection is the difficulty of distinguishing whether some of the commonly encountered abnormalities in the GLA gene are truly disease-causing mutations or polymorphisms that are not obligate disease causing (Froissart et al. 2003). Other screening procedures are based on the demonstration of reduced enzymatic activity in blood cells, plasma, or dried blood spots. An associated limitation of such methods is the inability to reliably detect female carriers and some atypically affected male hemizygotes. As an alternative screening method, it is contemplated by Hopwood and colleagues to use quantification of α-Gal A protein with specific antibodies in analogy to screening for other lysosomal enzymopathies (Tan et al. 2008).

Fabry biomarkers

Following the successful biomarker discovery for Gaucher disease, attempts have been made to identify comparable metabolite and protein biomarkers for Fabry disease.

Lack of prominent plasma protein abnormalities

In symptomatic Fabry patients, abnormalities are encountered that point to a low-grade inflammatory disorder (Schiffmann 2009). Indeed, increased circulating levels of C-reactive protein (CRP) and the hydrolases myeloperoxidase, metalloproteinase 9, and chitotriosidase, have been reported for symptomatic Fabry hemizygotes (Vedder et al. 2006a; Kaneski et al. 2006; Shah et al. 2007). The abnormalities in the hydrolases, all produced by phagocytes, are not very striking and certainly not specific for Fabry disease. As inflammation is not thought to be a major component of Fabry disease, the value of the above-mentioned hydrolases as biomarkers seems limited. Monitoring corrections induced by therapy in the levels of abnormal hydrolases may, however, be informative. For example, clear reductions were noted in elevated chitotriosidase in male Fabry patients during enzyme therapy and relapses following the induction of neutralizing antibodies against the therapeutic enzyme (Vedder et al. 2006a). The prevalent concept is that Fabry disease is a systemic vasculopathy due to Gb3 storage in endothelial cells. Considerable attention has therefore been focused on identifying plasma protein abnormalities reflecting endothelial activation. Known plasma proteins reflecting endothelial activation have been considered as candidate biomarkers for Fabry disease. This has been further stimulated by various reports demonstrating disturbed vascular circulation and a prothrombotic state in Fabry disease (Moore et al. 2007a). Laboratory investigations that have been performed to assess determinants of coagulation or activation of the endothelium in Fabry patients are not always in accordance. In a very recent, thorough study conducted with a large cohort of Fabry patients in the Academic Medical Center in Amsterdam, only minimal abnormalities in indicators of coagulation, fibrinolysis, and platelet and endothelial activation were detected (Vedder et al. 2009). Next to targeted analysis of plasma proteins already known to reflect endothelial activation, the search for protein biomarkers of Fabry disease has been extended to analysis of the entire plasma proteome. Moore and co-workers were the first to elegantly investigate plasma of children with Fabry disease prior to and after ERT using tryptic digestion of plasma protein and differentially labelling peptides with stable isotopes, such that consistent mass differences were introduced into selected amino acid residues (Moore et al. 2007b). The LC-MS analysis showed only modest therapy-induced changes in a few proteins. Most importantly, it stimulated the investigators to further analyze α−2-antiplasmin concentrations in Fabry patients using citrate-based plasma specimens and a chromogenic method. The mean level of α-2-antiplasmin in 34 Fabry patients aged 10–55 years was 85% vs. normal laboratory mean of 105; range 82–123%. A systematic proteomics analysis of blood specimens from Fabry patients conducted at the Academic Medical Center in Amsterdam has not led to the discovery of prominent abnormalities in plasma proteins in symptomatic Fabry patients (Aerts and co-workers, manuscript in preparation).

Lipid abnormalities as potential Fabry biomarkers

For a long time, the primary accumulating globoside Gb3 has been considered as a surrogate marker for Fabry disease. Reduction of Gb3 in tissue biopsies has actually served as the criterion for the registration of agalsidase beta. The globoside Gb3 is not only elevated inside storage cells but is also present in abnormally high concentrations in bodily fluids, such as plasma and urine. It is very well documented that in symptomatic Fabry hemizygotes both plasma and urinary Gb3 are increased (Desnick and Ioannou 2001). Intriguingly, in female carriers of Fabry disease, urinary Gb3 is generally increased, but plasma Gb3 levels tend to be in the normal range (Vedder et al. 2007c). Various methods have meanwhile been developed for detecting Gb3. Mass-spectrometry-based and high-performance liquid chromatography (HPLC)-based procedures have become available, allowing accurate quantification of the globoside (Mills et al. 2004; Fauler et al. 2005; Fuller et al. 2005; Auray-Blais et al. 2007; Groener et al. 2007). Demonstration of increased Gb3, either in plasma or urine, is of great value for diagnostic purposes, particularly for putative Fabry females carrying a GLA mutation with unclear consequences. It has been reported that urinary Gb3 levels correlate with the predicted severity of GLA mutations (Auray-Blais et al. 2008).

Globotriaosylceramide (Gb3)

The value of plasma or urinary Gb3 as biomarker to monitor progression of Fabry disease is questionable. In several investigations, plasma or urinary Gb3 has been found to poorly reflect Fabry disease manifestation and therapeutic outcome (Vedder et al. 2007c; Young et al. 2005; Whitfield et al. 2005; Bekri et al. 2006). For example, many male Fabry patients lacking endogenous α-galactosidase A develop neutralizing antibodies during ERT (Linthorst et al. 2004). The occurrence of such antibodies is accompanied by a relapse in elevated plasma Gb3, but the clinical significance of this remains unclear (Vedder et al. 2008). The poor predictive value of plasma or urinary Gb3 levels for Fabry disease manifestation is not entirely surprising. Prominent Gb3 accumulation has been noted in placental tissue of a Fabry hemizygote (Popli et al. 1990; Vedder et al. 2006b), a finding illustrating that onset of clinical complications occurs only after several years of lipid deposition. Gb3 accumulation apparently occurs in hemizygotes at or even before birth, long before any clinical symptoms are prominent. The same discrepancy between early storage of Gb3 and clinical symptoms is also noted in Fabry mice generated by disruption of the GLA gene (Ohshima et al. 1997). Plasma Gb3 concentrations in some presymptomatic boys have been found to exceed those in symptomatic adult hemizygotes (Vedder et al. 2007c), The absence of infantile manifestations in Fabry patients completely lacking α-galactosidase A activity also indicates that Gb3 accumulation does not cause immediately, and maybe even not directly, signs of disease. An investigation by Barbey and co-workers provided evidence for the presence of an unidentified substance in plasma of symptomatic Fabry disease patients that stimulates proliferation of vascular smooth-muscle cells and cardiomyocytes in vitro (Barbey et al. 2006a). It is conceivable that this substance is a causative factor in the development of left ventricular hypertrophy and increased intima media thickness in Fabry patients (Boutouyrie et al. 2002; Barbey et al. 2006b; Kalliokoski et al. 2006; Vedder et al. 2007b; Rombach et al. 2010b).

Globotriaosylsphingosine (lysoGb3)

The puzzling findings prompted us to re-examine Gb3 and its metabolites in Fabry patients (Aerts et al. 2008b). During this investigation, it was discovered that plasma of Fabry patients contains markedly increased concentrations of deacylated globotriaosylceramide, globotriaosylsphingosine (here abbreviated as lysoGb3). The relative increase in plasma concentrations of the cationic amphiphilic lysoGb3 spectacularly exceeds that of Gb3 by more than an order of magnitude. High nanomolar lysoGb3 concentrations occur in plasma samples from symptomatic male Fabry patients. Also in the case of symptomatic female Fabry patients, clearly increased levels of lysoGb3 were detected, whereas concomitantly, Gb3 concentrations were in the high–normal range (Aerts et al. 2008b). Thus, measurement of plasma lysoGb3 seems to offer a very useful diagnostic tool, particularly in the case of female Fabry patients. Meanwhile, the findings for lysoGb3 in Fabry disease have been confirmed by independent investigations (Togawa et al. 2010b; Auray-Blais et al. 2010; Togawa et al. 2010a). Using a more sensitive mass spectrometrical detection, Auray-Blais and co-workers demonstrated the presence of elevated lysoGb3 in urine samples of Fabry patients (Auray-Blais et al. 2010). The relationship between plasma lysoGb3 concentrations and Fabry disease manifestations has been investigated (Rombach et al. 2010a). It is clear that in Fabry hemizygotes, both in humans and mice, plasma lysoGb3 is already increased at birth and consequently does not correlate strictly with symptoms (Aerts et al. 2008b; Rombach et al. 2010b). In the case of female hemizygotes, lysoGb3 is low at birth and increases gradually with age. Some degree of correlation of plasma lysoGb3 levels and disease manifestation seems to exist for female hemizygotes. Preliminary data indicate that high plasma lysoGb3 correlates with increased risk for cerebrovascular disease in males (Rombach et al. 2010b). Of interest, life-time exposure to plasma lysoGb3 is found to correlate with disease severity in male as well as female patients (Rombach et al. 2010b). These observations suggest, but certainly do not prove, that lysoGb3 plays a direct role in the pathogenesis of Fabry disease. A role as pathogenic factor for lysoGb3 is suggested by the elegant studies of Ortiz and co-workers (Sanchez-Niño et al. 2010). They demonstrated that exposure of cultured glomerular podocytes to lysoGb3 increased the expression of tumor growth factor (TGF)-beta-1, extracellular matrix proteins (fibronectin and type IV collagen), and CD74. It was concluded from these findings that lysoGb3 may have a role in glomerular injury in Fabry disease by promoting the release of secondary mediators of glomerular injury common to diabetic nephropathy (Sanchez-Niño et al. 2010). It has already been found that lysoGb3 at concentrations occurring in plasma of symptomatic Fabry patients is able to induce proliferation of smooth-muscle cells in vitro, possibly explaining the increased intima media thickness in Fabry patients (Boutouyrie et al. 2002; Barbey et al. 2006b; Kalliokoski et al. 2006; Vedder et al. 2007b; Rombach et al. 2010a). The effect of ERT on plasma lysoGb3 has recently been reported (van Breemen et al. 2011). Reassuringly, therapy was found to be followed by reduced plasma lysoGb3 levels.

Inhibodies: new, versatile tools for diagnosis, monitoring therapeutic enzyme targeting and fundamental research

A major limitation so far in evaluating LSDs has been the lack of a technology that allows selective labeling of active lysosomal hydrolases in vitro and in vivo. The availability of such a method would allow more advanced diagnostic tests and more sophisticated monitoring of tissue targeting of therapeutic proteins, and would boost fundamental research on lysosomal hydrolases. Recently we conceived such a method for the lysosomal glucocerebrosidase based on activity-based covalent labeling of the enzyme’s nucleophile, glutamate 340, with fluorescent probes. The catalytic mechanism of glucocerebrosidase, a retaining beta-glucosidase, has been elucidated in detail (Liou and Grabowski 2009; Rempel and Withers 2008). We employed the fact that conduritol B-epoxide and cyclophellitol are potent suicide inhibitors of glucocerebrosidase (van Es et al. 1994; Atsumi et al. 1993). By coupling a fluorescent boron-dipyrromethene (BODIPY) moiety via a triazole linker to cyclophellitol, extremely potent fluorescent suicide inhibitors for glucocerebrosidase were generated (Witte et al. 2010). The probes are amphiphilic and easily penetrate cells, allowing in vitro and in vivo labeling of glucocerebrosidase in cells and whole organisms. The term inhibody is coined for these types of probes, as they act as suicide inhibitors and allow direct visualization of originally active enzyme molecules with comparable methods as used for specific antibodies. The detection power of the developed inhibodies for glucocerebrosidase is amazing: as little as a few attomoles of enzyme can be visualized on slab gels by fluorescence scanning. The specificity of glucocerebrosidase labeling with the inhibody probes is also extraordinary high, even when tissues are analyzed (Atsumi et al. 1993). It has been demonstrated that the probes can be used for diagnostic purposes, allowing visualization of active glucocerebrosidase in very few cultured skin fibroblasts. The probes can also be employed for fluorescence-activated cell-sorting analysis, fluorescence microscopy, and pulse-chase experiments (Atsumi et al. 1993). It is envisioned that comparable specific probes can be designed for other retaining lysosomal glycosidases by adaptations in the sugar configuration.

An interesting potential application for inhibodies is to be found in subtle labeling of therapeutic recombinant protein and monitoring its tissue distribution following intravenous administration. The use of a near-infrared fluorophore to enable visualization of therapeutic glucocerebrosidase in individual patients is appealing. A similar approach was recently reported using a radio-tagged suicide inhibitor, allowing visualization of administered labeled glucocerebrosidase in mice using positron emission tomography (Phenix et al. 2010).

Another area of application for the fluorescent inhibody probes is laid in fundamental research. It now becomes feasible to obtain information about the exact tissue distribution of enzymatically active glucocerebrosidase. Such information may render new insights into Gaucher disease and help our understanding of why carriership for the disorder constitutes a risk factor for parkinsonism (Goker-Alpan et al. 2008). Glucocerebrosidase remains in many aspects an enigmatic enzyme. It is transported to lysosomes independently of the mannose-6-phophate receptor system (Aerts et al. 1988; Rijnboutt et al. 1991a; Rijnboutt et al. 1991b).. The membrane protein LIMP2 has been shown to act as sorting receptor in certain cell types, such as fibroblasts (Reczek et al. 2007). Other cell types, including blood cells, apparently can employ an alternative sorting receptor (Balreira et al. 2008). Analysis of LIMP2-deficient mice and humans with the available inhibody probes for glucocerebrosidase may be of great value in this connection. A next challenge is designing comparable probes that recognize and label several beta-glucosidases. Besides glucocerebrosidase, humans contain other beta-glucosidases, such as GBA2 (van Weely et al. 1993a; Boot et al. 2007; Yildiz et al. 2006; Dekker et al. 2010) and GBA3 [163] that might play a role in the pathogenesis of Gaucher disease.

In summary, the search for biomarkers of Gaucher disease have been extraordinary productive. Next to elevations in circulating glucosylceramide and gangliosides such as GM3 in Gaucher patients, striking abnormalities in plasma concentrations of some proteins have been identified. For example, increases in chitotriosidase up to 10,000-fold above normal have been identified in some Gaucher patients. For some of these proteins, i.e., chitotriosidase and PARC/CCL18, it has been demonstrated that they stem from storage cells. The circulating levels of these proteins offer insight into the total burden of storage cells in Gaucher patients. Regular monitoring of chitotriosidase, or PARC/CCL18 in chitotriosidase-deficient individuals, with sensitive assays is widely applied in Gaucher clinics and assists in clinical decision making.

The outcome of investigations on protein biomarkers for Fabry disease has been comparatively disappointing. Accurate methods have been developed to quantify the primary storage lipid Gb3 in plasma and urine specimens. However, it is generally felt that measurement of plasma and urinary Gb3 is only useful for diagnostic purposes and offers no sensitive tool to monitor Fabry disease progression. An exciting new development is the discovery of elevated lysoGb3 in Fabry patients. Laboratory findings suggest that lysoGb3 may even play a direct pathogenic role. Systematic and solid investigations with large cohorts of Fabry patients are necessary to reveal the true value of lysoGb3 as biomarker. In any case, the demonstration of increased plasma lysoGb3 in female heterozygotes offers an important additional diagnostic tool.

The availability of fluorescent probes, so-called inhibodies, which allow selective labeling ultrasensitive detection of glucocerebrosidase offers new opportunities for diagnosis of the disorder. In addition, the probes may be employed in the future in monitoring tissue distribution of recombinant therapeutic protein in individual Gaucher patients. Finally, inhibodies may boost fundamental research on glucocerebrosidase and the pathogenesis of Gaucher disease and parkinsonism.

Biomarkers, biochemical abnormalities, and surrogate markers of disease

In the case of lysosomal storage diseases, biochemical abnormalities can be identified in blood and/or urine samples as described above for Gaucher and Fabry disease. Not all of these abnormalities should be called biomarkers. Such terminology should be restricted to abnormalities that are disease specific and are in the context of disease manifestation, for example, circulating protein or metabolite markers stemming from storage cells. Generally, these biomarkers reflect not one particular symptom but rather the total body burden of storage cells. Thus, such biomarkers are not true surrogate markers of disease that accurately reflect a particular symptom in one organ. Although some of the available biomarkers, such as chitotriosidase, may assist in clinical management, further studies analyzing the correlation between long-term biomarker responses and objective clinical outcome parameters following therapeutic interventions are still warranted.