Literature DB >> 21444998

Requirements for efficient minus strand strong-stop DNA transfer in human immunodeficiency virus 1.

Dorota Piekna-Przybylska1, Robert A Bambara.   

Abstract

After HIV-1 enters a human cell, its RNA genome is converted into double stranded DNA during the multistep process of reverse transcription. First (minus) strand DNA synthesis is initiated near the 5' end of the viral RNA, where only a short fragment of the genome is copied. In order to continue DNA synthesis the virus employs a complicated mechanism, which enables transferring of the growing minus strand DNA to a remote position at the genomic 3' end. This is called minus strand DNA transfer. The transfer enables regeneration of long terminal repeat sequences, which are crucial for viral genomic DNA integration into the host chromosome. Numerous factors have been identified that stimulate minus strand DNA transfer. In this review we focus on describing protein-RNA and RNA-RNA interactions, as well as RNA structural features, known to facilitate this step in reverse transcription.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21444998      PMCID: PMC3230551          DOI: 10.4161/rna.8.2.14802

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  82 in total

Review 1.  New findings on transcription regulation across different HIV-1 subtypes.

Authors:  Eva Ramírez de Arellano; Vincent Soriano; José Alcamil; Africa Holguín
Journal:  AIDS Rev       Date:  2006 Jan-Mar       Impact factor: 2.500

Review 2.  Long-distance RNA-RNA interactions in plant virus gene expression and replication.

Authors:  W Allen Miller; K Andrew White
Journal:  Annu Rev Phytopathol       Date:  2006       Impact factor: 13.078

3.  NCp7 activates HIV-1Lai RNA dimerization by converting a transient loop-loop complex into a stable dimer.

Authors:  D Muriaux; H De Rocquigny; B P Roques; J Paoletti
Journal:  J Biol Chem       Date:  1996-12-27       Impact factor: 5.157

4.  Stimulation of HIV-1 minus strand strong stop DNA transfer by genomic sequences 3' of the primer binding site.

Authors:  Min Song; Mini Balakrishnan; Yan Chen; Bernard P Roques; Robert A Bambara
Journal:  J Biol Chem       Date:  2006-06-15       Impact factor: 5.157

5.  The 3' end of the foot-and-mouth disease virus genome establishes two distinct long-range RNA-RNA interactions with the 5' end region.

Authors:  Paula Serrano; Miguel Rodriguez Pulido; Margarita Sáiz; Encarnacion Martínez-Salas
Journal:  J Gen Virol       Date:  2006-10       Impact factor: 3.891

6.  Mechanisms that prevent template inactivation by HIV-1 reverse transcriptase RNase H cleavages.

Authors:  Vandana Purohit; Bernard P Roques; Baek Kim; Robert A Bambara
Journal:  J Biol Chem       Date:  2007-03-02       Impact factor: 5.157

7.  Proximity and branch migration mechanisms in HIV-1 minus strand strong stop DNA transfer.

Authors:  Min Song; Vandana P Basu; Mark N Hanson; Bernard P Roques; Robert A Bambara
Journal:  J Biol Chem       Date:  2007-12-11       Impact factor: 5.157

Review 8.  RNase H activity: structure, specificity, and function in reverse transcription.

Authors:  Sharon J Schultz; James J Champoux
Journal:  Virus Res       Date:  2008-02-07       Impact factor: 3.303

9.  Characterization of a nucleocapsid-like region and of two distinct primer tRNALys,2 binding sites in the endogenous retrovirus Gypsy.

Authors:  Caroline Gabus; Roland Ivanyi-Nagy; Julien Depollier; Alain Bucheton; Alain Pelisson; Jean-Luc Darlix
Journal:  Nucleic Acids Res       Date:  2006-10-13       Impact factor: 16.971

10.  Circularization of the HIV-1 RNA genome.

Authors:  Marcel Ooms; Truus E M Abbink; Chi Pham; Ben Berkhout
Journal:  Nucleic Acids Res       Date:  2007-08-07       Impact factor: 16.971

View more
  11 in total

1.  Selection of fully processed HIV-1 nucleocapsid protein is required for optimal nucleic acid chaperone activity in reverse transcription.

Authors:  Tiyun Wu; Robert J Gorelick; Judith G Levin
Journal:  Virus Res       Date:  2014-06-20       Impact factor: 3.303

2.  RNA virus replication, transcription and recombination.

Authors:  K Andrew White; Luis Enjuanes; Ben Berkhout
Journal:  RNA Biol       Date:  2011-03-01       Impact factor: 4.652

3.  Zinc finger function of HIV-1 nucleocapsid protein is required for removal of 5'-terminal genomic RNA fragments: a paradigm for RNA removal reactions in HIV-1 reverse transcription.

Authors:  Christopher B Hergott; Mithun Mitra; Jianhui Guo; Tiyun Wu; Jennifer T Miller; Yasumasa Iwatani; Robert J Gorelick; Judith G Levin
Journal:  Virus Res       Date:  2012-11-10       Impact factor: 3.303

4.  Impairment of HIV-1 cDNA synthesis by DBR1 knockdown.

Authors:  Alvaro E Galvis; Hugh E Fisher; Takayuki Nitta; Hung Fan; David Camerini
Journal:  J Virol       Date:  2014-03-26       Impact factor: 5.103

5.  Structural Insights into the HIV-1 Minus-strand Strong-stop DNA.

Authors:  Yingying Chen; Ouerdia Maskri; Françoise Chaminade; Brigitte René; Jessica Benkaroun; Julien Godet; Yves Mély; Olivier Mauffret; Philippe Fossé
Journal:  J Biol Chem       Date:  2015-12-14       Impact factor: 5.157

6.  Template-primer binding affinity and RNase H cleavage specificity contribute to the strand transfer efficiency of HIV-1 reverse transcriptase.

Authors:  Joanna Luczkowiak; Tania Matamoros; Luis Menéndez-Arias
Journal:  J Biol Chem       Date:  2018-07-10       Impact factor: 5.157

7.  Resolution of Specific Nucleotide Mismatches by Wild-Type and AZT-Resistant Reverse Transcriptases during HIV-1 Replication.

Authors:  Siarhei Kharytonchyk; Steven R King; Clement B Ndongmo; Krista L Stilger; Wenfeng An; Alice Telesnitsky
Journal:  J Mol Biol       Date:  2016-04-10       Impact factor: 5.469

8.  Next-Generation Sequencing in a Direct Model of HIV Infection Reveals Important Parallels to and Differences from In Vivo Reservoir Dynamics.

Authors:  Marilia Rita Pinzone; Maria Paola Bertuccio; D Jake VanBelzen; Ryan Zurakowski; Una O'Doherty
Journal:  J Virol       Date:  2020-04-16       Impact factor: 6.549

9.  HIV-1 Tropism Determines Different Mutation Profiles in Proviral DNA.

Authors:  Sieberth Nascimento-Brito; Jean Paulo Zukurov; Juliana T Maricato; Angela C Volpini; Anna Christina M Salim; Flávio M G Araújo; Roney S Coimbra; Guilherme C Oliveira; Fernando Antoneli; Luiz Mário R Janini
Journal:  PLoS One       Date:  2015-09-28       Impact factor: 3.240

10.  Structural determinants of human APOBEC3A enzymatic and nucleic acid binding properties.

Authors:  Mithun Mitra; Kamil Hercík; In-Ja L Byeon; Jinwoo Ahn; Shawn Hill; Kathyrn Hinchee-Rodriguez; Dustin Singer; Chang-Hyeock Byeon; Lisa M Charlton; Gabriel Nam; Gisela Heidecker; Angela M Gronenborn; Judith G Levin
Journal:  Nucleic Acids Res       Date:  2013-10-24       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.