Literature DB >> 21443196

Local structural changes, global data views: graphical substructure-activity relationship trailing.

Mathias Wawer1, Jürgen Bajorath.   

Abstract

The systematic extraction of structure-activity relationship (SAR) information from large and diverse compound data sets depends on the application of computational analysis methods. Irrespective of the methodological details, the ultimate goal of large-scale SAR analysis is to identify most informative compounds and rationalize structural changes that determine SAR behavior. Such insights provide a basis for further chemical exploration. Herein we introduce the first graphical SAR analysis method that globally organizes large compound data sets on the basis of local structural relationships, hence providing an immediate access to important structural modifications and SAR determinants.

Mesh:

Year:  2011        PMID: 21443196     DOI: 10.1021/jm200026b

Source DB:  PubMed          Journal:  J Med Chem        ISSN: 0022-2623            Impact factor:   7.446


  17 in total

1.  Systematic mining of analog series with related core structures in multi-target activity space.

Authors:  Disha Gupta-Ostermann; Ye Hu; Jürgen Bajorath
Journal:  J Comput Aided Mol Des       Date:  2013-08-24       Impact factor: 3.686

2.  The use of matched molecular series networks for cross target structure activity relationship translation and potency prediction.

Authors:  Christopher E Keefer; George Chang
Journal:  Medchemcomm       Date:  2017-10-11       Impact factor: 3.597

Review 3.  Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review.

Authors:  Peter Csermely; Tamás Korcsmáros; Huba J M Kiss; Gábor London; Ruth Nussinov
Journal:  Pharmacol Ther       Date:  2013-02-04       Impact factor: 12.310

4.  Lessons learned from the design of chemical space networks and opportunities for new applications.

Authors:  Martin Vogt; Dagmar Stumpfe; Gerald M Maggiora; Jürgen Bajorath
Journal:  J Comput Aided Mol Des       Date:  2016-03-05       Impact factor: 3.686

5.  Ligand-based approaches to activity prediction for the early stage of structure-activity-relationship progression.

Authors:  Itsuki Maeda; Akinori Sato; Shunsuke Tamura; Tomoyuki Miyao
Journal:  J Comput Aided Mol Des       Date:  2022-03-29       Impact factor: 3.686

6.  Fragment-Based Analysis of Ligand Dockings Improves Classification of Actives.

Authors:  Richard K Belew; Stefano Forli; David S Goodsell; T J O'Donnell; Arthur J Olson
Journal:  J Chem Inf Model       Date:  2016-07-25       Impact factor: 4.956

7.  Adapting the DeepSARM approach for dual-target ligand design.

Authors:  Atsushi Yoshimori; Huabin Hu; Jürgen Bajorath
Journal:  J Comput Aided Mol Des       Date:  2021-03-13       Impact factor: 3.686

8.  Freely available compound data sets and software tools for chemoinformatics and computational medicinal chemistry applications.

Authors:  Ye Hu; Jurgen Bajorath
Journal:  F1000Res       Date:  2012-08-14

9.  Using matched molecular series as a predictive tool to optimize biological activity.

Authors:  Noel M O'Boyle; Jonas Boström; Roger A Sayle; Adrian Gill
Journal:  J Med Chem       Date:  2014-03-14       Impact factor: 7.446

10.  Structure-activity relationship analysis on the basis of matched molecular pairs.

Authors:  Anne Mai Wassermann
Journal:  J Cheminform       Date:  2014-03-11       Impact factor: 5.514

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