Literature DB >> 21441354

Increased number of microRNA target sites in genes encoded in CNV regions. Evidence for an evolutionary genomic interaction.

Kyriakos Felekkis1, Konstantinos Voskarides, Harsh Dweep, Carsten Sticht, Norbert Gretz, Constantinos Deltas.   

Abstract

MicroRNAs (miRNAs) and copy number variations (CNVs) are two newly discovered genetic elements that have revolutionized the field of molecular biology and genetics. By performing in silico whole genome analysis, we demonstrate that both the number of miRNAs that target genes found in CNV regions as well as the number of miRNA-binding sites are significantly higher than those of genes found in non-CNV regions. This suggests that miRNAs may have acted as equilibrators of gene expression during evolution in an attempt to regulate aberrant gene expression and to increase the tolerance to genome plasticity.

Mesh:

Substances:

Year:  2011        PMID: 21441354     DOI: 10.1093/molbev/msr078

Source DB:  PubMed          Journal:  Mol Biol Evol        ISSN: 0737-4038            Impact factor:   16.240


  19 in total

Review 1.  Adaptive potential of genomic structural variation in human and mammalian evolution.

Authors:  David W Radke; Charles Lee
Journal:  Brief Funct Genomics       Date:  2015-05-23       Impact factor: 4.241

2.  No Evidence that MicroRNAs Coevolve with Genes Located in Copy Number Regions.

Authors:  Richard Jovelin
Journal:  Mol Biol Evol       Date:  2015-03-24       Impact factor: 16.240

3.  Regulatory element copy number differences shape primate expression profiles.

Authors:  Rebecca C Iskow; Omer Gokcumen; Alexej Abyzov; Joanna Malukiewicz; Qihui Zhu; Ann T Sukumar; Athma A Pai; Ryan E Mills; Lukas Habegger; Darren A Cusanovich; Meagan A Rubel; George H Perry; Mark Gerstein; Anne C Stone; Yoav Gilad; Charles Lee
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-13       Impact factor: 11.205

4.  Characterization of a set of tumor suppressor microRNAs in T cell acute lymphoblastic leukemia.

Authors:  Viraj R Sanghvi; Konstantinos J Mavrakis; Joni Van der Meulen; Michael Boice; Andrew L Wolfe; Mark Carty; Prathibha Mohan; Pieter Rondou; Nicholas D Socci; Yves Benoit; Tom Taghon; Pieter Van Vlierberghe; Christina S Leslie; Frank Speleman; Hans-Guido Wendel
Journal:  Sci Signal       Date:  2014-11-18       Impact factor: 8.192

5.  Pleiotropic constraints, expression level, and the evolution of miRNA sequences.

Authors:  Richard Jovelin
Journal:  J Mol Evol       Date:  2013-10-08       Impact factor: 2.395

6.  Homo sapiens exhibit a distinct pattern of CNV genes regulation: an important role of miRNAs and SNPs in expression plasticity.

Authors:  Harsh Dweep; Nada Kubikova; Norbert Gretz; Konstantinos Voskarides; Kyriacos Felekkis
Journal:  Sci Rep       Date:  2015-07-16       Impact factor: 4.379

7.  Continuing difficulties in interpreting CNV data: lessons from a genome-wide CNV association study of Australian HNPCC/lynch syndrome patients.

Authors:  Bente A Talseth-Palmer; Elizabeth G Holliday; Tiffany-Jane Evans; Mark McEvoy; John Attia; Desma M Grice; Amy L Masson; Cliff Meldrum; Allan Spigelman; Rodney J Scott
Journal:  BMC Med Genomics       Date:  2013-03-26       Impact factor: 3.063

8.  Parallel analysis of mRNA and microRNA microarray profiles to explore functional regulatory patterns in polycystic kidney disease: using PKD/Mhm rat model.

Authors:  Harsh Dweep; Carsten Sticht; Asawari Kharkar; Priyanka Pandey; Norbert Gretz
Journal:  PLoS One       Date:  2013-01-10       Impact factor: 3.240

9.  In-Silico Algorithms for the Screening of Possible microRNA Binding Sites and Their Interactions.

Authors:  Harsh Dweep; Carsten Sticht; Norbert Gretz
Journal:  Curr Genomics       Date:  2013-04       Impact factor: 2.236

10.  Insights into the regulation of human CNV-miRNAs from the view of their target genes.

Authors:  Xudong Wu; Dinglin Zhang; Guohui Li
Journal:  BMC Genomics       Date:  2012-12-18       Impact factor: 3.969

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.