Literature DB >> 21439812

Moving DNA around: DNA transposition and retroviral integration.

Sherwin P Montaño1, Phoebe A Rice.   

Abstract

Mobile DNA elements are found in all kingdoms of life, and they employ numerous mechanisms to move within and between genomes. Here we review recent structural advances in understanding two very different families of DNA transposases and retroviral integrases: the DDE and Y1 groups. Even within the DDE family which shares a conserved catalytic domain, there is great diversity in the architecture of the synaptic complexes formed by the intact enzymes with their cognate element-end DNAs. However, recurring themes arise from comparing these complexes, such as stabilization by an intertwined network of protein-DNA and protein-protein contacts, and catalysis in trans, where each active subunit catalyzes the chemical steps on one DNA segment but also binds specific sequences on the other.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 21439812      PMCID: PMC3112294          DOI: 10.1016/j.sbi.2011.03.004

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  38 in total

1.  Mechanism of IS200/IS605 family DNA transposases: activation and transposon-directed target site selection.

Authors:  Orsolya Barabas; Donald R Ronning; Catherine Guynet; Alison Burgess Hickman; Bao Ton-Hoang; Michael Chandler; Fred Dyda
Journal:  Cell       Date:  2008-01-25       Impact factor: 41.582

Review 2.  Early steps of V(D)J rearrangement: insights from biochemical studies of RAG-RSS complexes.

Authors:  Patrick C Swanson; Sushil Kumar; Prafulla Raval
Journal:  Adv Exp Med Biol       Date:  2009       Impact factor: 2.622

3.  The AAA+ ClpX machine unfolds a keystone subunit to remodel the Mu transpososome.

Authors:  Aliaa H Abdelhakim; Robert T Sauer; Tania A Baker
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-25       Impact factor: 11.205

4.  Crystal structure of the RAG1 dimerization domain reveals multiple zinc-binding motifs including a novel zinc binuclear cluster.

Authors:  S F Bellon; K K Rodgers; D G Schatz; J E Coleman; T A Steitz
Journal:  Nat Struct Biol       Date:  1997-07

5.  Crystal structure of the specific DNA-binding domain of Tc3 transposase of C.elegans in complex with transposon DNA.

Authors:  G van Pouderoyen; R F Ketting; A Perrakis; R H Plasterk; T K Sixma
Journal:  EMBO J       Date:  1997-10-01       Impact factor: 11.598

6.  Reaction mechanism of alkaline phosphatase based on crystal structures. Two-metal ion catalysis.

Authors:  E E Kim; H W Wyckoff
Journal:  J Mol Biol       Date:  1991-03-20       Impact factor: 5.469

Review 7.  Integrating prokaryotes and eukaryotes: DNA transposases in light of structure.

Authors:  Alison Burgess Hickman; Michael Chandler; Fred Dyda
Journal:  Crit Rev Biochem Mol Biol       Date:  2010-02       Impact factor: 8.250

8.  Structure of the RAG1 nonamer binding domain with DNA reveals a dimer that mediates DNA synapsis.

Authors:  Fang Fang Yin; Scott Bailey; C Axel Innis; Mihai Ciubotaru; Satwik Kamtekar; Thomas A Steitz; David G Schatz
Journal:  Nat Struct Mol Biol       Date:  2009-04-26       Impact factor: 15.369

9.  Molecular architecture of the Mos1 paired-end complex: the structural basis of DNA transposition in a eukaryote.

Authors:  Julia M Richardson; Sean D Colloms; David J Finnegan; Malcolm D Walkinshaw
Journal:  Cell       Date:  2009-09-18       Impact factor: 41.582

10.  Architecture of a serine recombinase-DNA regulatory complex.

Authors:  Kent W Mouw; Sally-J Rowland; Mark M Gajjar; Martin R Boocock; W Marshall Stark; Phoebe A Rice
Journal:  Mol Cell       Date:  2008-04-25       Impact factor: 17.970

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  28 in total

1.  Mechanistic basis for RAG discrimination between recombination sites and the off-target sites of human lymphomas.

Authors:  Noriko Shimazaki; Amjad Askary; Patrick C Swanson; Michael R Lieber
Journal:  Mol Cell Biol       Date:  2011-11-07       Impact factor: 4.272

2.  An Atypical AAA+ ATPase Assembly Controls Efficient Transposition through DNA Remodeling and Transposase Recruitment.

Authors:  Ernesto Arias-Palomo; James M Berger
Journal:  Cell       Date:  2015-08-13       Impact factor: 41.582

3.  Target capture during Mos1 transposition.

Authors:  Aude Pflieger; Jerôme Jaillet; Agnès Petit; Corinne Augé-Gouillou; Sylvaine Renault
Journal:  J Biol Chem       Date:  2013-11-22       Impact factor: 5.157

4.  Unlocking Tn3-family transposase activity in vitro unveils an asymetric pathway for transposome assembly.

Authors:  Emilien Nicolas; Cédric A Oger; Nathan Nguyen; Michaël Lambin; Amandine Draime; Sébastien C Leterme; Michael Chandler; Bernard F J Hallet
Journal:  Proc Natl Acad Sci U S A       Date:  2017-01-17       Impact factor: 11.205

5.  Controlling DNA degradation from a distance: a new role for the Mu transposition enhancer.

Authors:  Wonyoung Choi; Rudra P Saha; Sooin Jang; Rasika M Harshey
Journal:  Mol Microbiol       Date:  2014-09-25       Impact factor: 3.501

6.  Rigidity and flexibility characteristics of DD[E/D]-transposases Mos1 and Sleeping Beauty.

Authors:  Christopher M Singer; Diana Joy; Donald J Jacobs; Irina V Nesmelova
Journal:  Proteins       Date:  2019-01-10

7.  Structural basis for the activation and suppression of transposition during evolution of the RAG recombinase.

Authors:  Yuhang Zhang; Elizabeth Corbett; Shenping Wu; David G Schatz
Journal:  EMBO J       Date:  2020-09-18       Impact factor: 11.598

8.  Analysis of IS1236-mediated gene amplification events in Acinetobacter baylyi ADP1.

Authors:  Laura E Cuff; Kathryn T Elliott; Sarah C Seaton; Maliha K Ishaq; Nicole S Laniohan; Anna C Karls; Ellen L Neidle
Journal:  J Bacteriol       Date:  2012-06-15       Impact factor: 3.490

Review 9.  Mechanisms of DNA Transposition.

Authors:  Alison B Hickman; Fred Dyda
Journal:  Microbiol Spectr       Date:  2015-04

Review 10.  The emerging diversity of transpososome architectures.

Authors:  Fred Dyda; Michael Chandler; Alison Burgess Hickman
Journal:  Q Rev Biophys       Date:  2012-11       Impact factor: 5.318

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