Literature DB >> 21434608

Kinetic challenges facing oxalate, malonate, acetoacetate, and oxaloacetate decarboxylases.

Richard Wolfenden1, Charles A Lewis, Yang Yuan.   

Abstract

To compare the powers of the corresponding enzymes as catalysts, the rates of uncatalyzed decarboxylation of several aliphatic acids (oxalate, malonate, acetoacetate, and oxaloacetate) were determined at elevated temperatures and extrapolated to 25 °C. In the extreme case of oxalate, the rate of the uncatalyzed reaction at pH 4.2 was 1.1 × 10(-12) s(-1), implying a 2.5 × 10(13)-fold rate enhancement by oxalate decarboxylase. Whereas the enzymatic decarboxylation of oxalate requires O(2) and Mn(II), the uncatalyzed reaction is unaffected by the presence of these cofactors and appears to proceed by heterolytic elimination of CO(2).

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Year:  2011        PMID: 21434608      PMCID: PMC3077560          DOI: 10.1021/ja111457h

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  12 in total

1.  EPR spin trapping of an oxalate-derived free radical in the oxalate decarboxylase reaction.

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Journal:  Free Radic Biol Med       Date:  2011-01-26       Impact factor: 7.376

Review 2.  Cellular concentrations of enzymes and their substrates.

Authors:  K R Albe; M H Butler; B E Wright
Journal:  J Theor Biol       Date:  1990-03-22       Impact factor: 2.691

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Authors:  E Emiliani; B Riera
Journal:  Biochim Biophys Acta       Date:  1968-10-08

4.  A proficient enzyme.

Authors:  A Radzicka; R Wolfenden
Journal:  Science       Date:  1995-01-06       Impact factor: 47.728

5.  Metal ion inhibition of nonenzymatic pyridoxal phosphate catalyzed decarboxylation and transamination.

Authors:  R F Zabinski; M D Toney
Journal:  J Am Chem Soc       Date:  2001-01-17       Impact factor: 15.419

6.  Oxalate decarboxylase requires manganese and dioxygen for activity. Overexpression and characterization of Bacillus subtilis YvrK and YoaN.

Authors:  A Tanner; L Bowater; S A Fairhurst; S Bornemann
Journal:  J Biol Chem       Date:  2001-08-23       Impact factor: 5.157

7.  Charge development in the transition state for decarboxylations in water: spontaneous and acetone-catalyzed decarboxylation of aminomalonate.

Authors:  Brian P Callahan; Richard Wolfenden
Journal:  J Am Chem Soc       Date:  2004-04-14       Impact factor: 15.419

8.  Investigating the roles of putative active site residues in the oxalate decarboxylase from Bacillus subtilis.

Authors:  Drazenka Svedruzić; Yong Liu; Laurie A Reinhardt; Ewa Wroclawska; W Wallace Cleland; Nigel G J Richards
Journal:  Arch Biochem Biophys       Date:  2007-04-05       Impact factor: 4.013

9.  Mechanism of the reaction catalyzed by acetoacetate decarboxylase. Importance of lysine 116 in determining the pKa of active-site lysine 115.

Authors:  L A Highbarger; J A Gerlt; G L Kenyon
Journal:  Biochemistry       Date:  1996-01-09       Impact factor: 3.162

10.  Structure and function of PA4872 from Pseudomonas aeruginosa, a novel class of oxaloacetate decarboxylase from the PEP mutase/isocitrate lyase superfamily.

Authors:  Buvaneswari C Narayanan; Weiling Niu; Ying Han; Jiwen Zou; Patrick S Mariano; Debra Dunaway-Mariano; Osnat Herzberg
Journal:  Biochemistry       Date:  2007-12-15       Impact factor: 3.162

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  12 in total

1.  The role of biotin and oxamate in the carboxyltransferase reaction of pyruvate carboxylase.

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Journal:  Arch Biochem Biophys       Date:  2014-08-23       Impact factor: 4.013

2.  Observation of superoxide production during catalysis of Bacillus subtilis oxalate decarboxylase at pH 4.

Authors:  Umar T Twahir; Corey N Stedwell; Cory T Lee; Nigel G J Richards; Nicolas C Polfer; Alexander Angerhofer
Journal:  Free Radic Biol Med       Date:  2014-12-16       Impact factor: 7.376

3.  Identification of FAH domain-containing protein 1 (FAHD1) as oxaloacetate decarboxylase.

Authors:  Haymo Pircher; Susanne von Grafenstein; Thomas Diener; Christina Metzger; Eva Albertini; Andrea Taferner; Hermann Unterluggauer; Christian Kramer; Klaus R Liedl; Pidder Jansen-Dürr
Journal:  J Biol Chem       Date:  2015-01-09       Impact factor: 5.157

4.  A substrate-induced biotin binding pocket in the carboxyltransferase domain of pyruvate carboxylase.

Authors:  Adam D Lietzan; Martin St Maurice
Journal:  J Biol Chem       Date:  2013-05-22       Impact factor: 5.157

5.  Characterization of the Vibrio fischeri Fatty Acid Chemoreceptors, VfcB and VfcB2.

Authors:  K Nikolakakis; K Monfils; S Moriano-Gutierrez; C A Brennan; E G Ruby
Journal:  Appl Environ Microbiol       Date:  2015-11-13       Impact factor: 4.792

6.  Origin of Free Energy Barriers of Decarboxylation and the Reverse Process of CO2 Capture in Dimethylformamide and in Water.

Authors:  Shaoyuan Zhou; Bach T Nguyen; John P Richard; Ronald Kluger; Jiali Gao
Journal:  J Am Chem Soc       Date:  2020-12-29       Impact factor: 15.419

7.  Assigning the EPR fine structure parameters of the Mn(II) centers in Bacillus subtilis oxalate decarboxylase by site-directed mutagenesis and DFT/MM calculations.

Authors:  Pablo Campomanes; Whitney F Kellett; Lindsey M Easthon; Andrew Ozarowski; Karen N Allen; Alexander Angerhofer; Ursula Rothlisberger; Nigel G J Richards
Journal:  J Am Chem Soc       Date:  2014-01-28       Impact factor: 15.419

8.  Biodegradation of the artificial sweetener acesulfame in biological wastewater treatment and sandfilters.

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9.  Metabolic evolution of a deep-branching hyperthermophilic chemoautotrophic bacterium.

Authors:  Rogier Braakman; Eric Smith
Journal:  PLoS One       Date:  2014-02-05       Impact factor: 3.240

10.  An atomic-resolution view of neofunctionalization in the evolution of apicomplexan lactate dehydrogenases.

Authors:  Jeffrey I Boucher; Joseph R Jacobowitz; Brian C Beckett; Scott Classen; Douglas L Theobald
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