Literature DB >> 21431559

Decision tree and ensemble learning algorithms with their applications in bioinformatics.

Dongsheng Che1, Qi Liu, Khaled Rasheed, Xiuping Tao.   

Abstract

Machine learning approaches have wide applications in bioinformatics, and decision tree is one of the successful approaches applied in this field. In this chapter, we briefly review decision tree and related ensemble algorithms and show the successful applications of such approaches on solving biological problems. We hope that by learning the algorithms of decision trees and ensemble classifiers, biologists can get the basic ideas of how machine learning algorithms work. On the other hand, by being exposed to the applications of decision trees and ensemble algorithms in bioinformatics, computer scientists can get better ideas of which bioinformatics topics they may work on in their future research directions. We aim to provide a platform to bridge the gap between biologists and computer scientists.

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Mesh:

Year:  2011        PMID: 21431559     DOI: 10.1007/978-1-4419-7046-6_19

Source DB:  PubMed          Journal:  Adv Exp Med Biol        ISSN: 0065-2598            Impact factor:   2.622


  29 in total

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2.  A multibiomarker-based outcome risk stratification model for adult septic shock*.

Authors:  Hector R Wong; Christopher J Lindsell; Ville Pettilä; Nuala J Meyer; Simone A Thair; Sari Karlsson; James A Russell; Christopher D Fjell; John H Boyd; Esko Ruokonen; Michael G S Shashaty; Jason D Christie; Kimberly W Hart; Patrick Lahni; Keith R Walley
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Review 3.  Modeling microbial community structure and functional diversity across time and space.

Authors:  Peter E Larsen; Sean M Gibbons; Jack A Gilbert
Journal:  FEMS Microbiol Lett       Date:  2012-05-28       Impact factor: 2.742

4.  Improved Risk Stratification in Pediatric Septic Shock Using Both Protein and mRNA Biomarkers. PERSEVERE-XP.

Authors:  Hector R Wong; Natalie Z Cvijanovich; Nick Anas; Geoffrey L Allen; Neal J Thomas; Michael T Bigham; Scott L Weiss; Julie C Fitzgerald; Paul A Checchia; Keith Meyer; Michael Quasney; Mark Hall; Rainer Gedeit; Robert J Freishtat; Jeffrey Nowak; Shekhar S Raj; Shira Gertz; Jocelyn R Grunwell; Christopher J Lindsell
Journal:  Am J Respir Crit Care Med       Date:  2017-08-15       Impact factor: 21.405

Review 5.  Artificial Intelligence for Disease Assessment in Inflammatory Bowel Disease: How Will it Change Our Practice?

Authors:  Ryan W Stidham; Kento Takenaka
Journal:  Gastroenterology       Date:  2022-01-04       Impact factor: 22.682

Review 6.  Pediatric sepsis: challenges and adjunctive therapies.

Authors:  William Hanna; Hector R Wong
Journal:  Crit Care Clin       Date:  2013-01-03       Impact factor: 3.598

7.  Pediatric Sepsis Biomarker Risk Model-II: Redefining the Pediatric Sepsis Biomarker Risk Model With Septic Shock Phenotype.

Authors:  Hector R Wong; Natalie Z Cvijanovich; Nick Anas; Geoffrey L Allen; Neal J Thomas; Michael T Bigham; Scott L Weiss; Julie Fitzgerald; Paul A Checchia; Keith Meyer; Michael Quasney; Mark Hall; Rainer Gedeit; Robert J Freishtat; Jeffrey Nowak; Shekhar S Raj; Shira Gertz; Kelli Howard; Kelli Harmon; Patrick Lahni; Erin Frank; Kimberly W Hart; Trung C Nguyen; Christopher J Lindsell
Journal:  Crit Care Med       Date:  2016-11       Impact factor: 7.598

8.  Aggregating predictions from experts: a review of statistical methods, experiments, and applications.

Authors:  Thomas McAndrew; Nutcha Wattanachit; Graham C Gibson; Nicholas G Reich
Journal:  Wiley Interdiscip Rev Comput Stat       Date:  2020-06-16

9.  Prediction of axillary lymph node metastasis in primary breast cancer patients using a decision tree-based model.

Authors:  Masahiro Takada; Masahiro Sugimoto; Yasuhiro Naito; Hyeong-Gon Moon; Wonshik Han; Dong-Young Noh; Masahide Kondo; Katsumasa Kuroi; Hironobu Sasano; Takashi Inamoto; Masaru Tomita; Masakazu Toi
Journal:  BMC Med Inform Decis Mak       Date:  2012-06-13       Impact factor: 2.796

Review 10.  Computational Biology and Machine Learning Approaches to Understand Mechanistic Microbiome-Host Interactions.

Authors:  Padhmanand Sudhakar; Kathleen Machiels; Bram Verstockt; Tamas Korcsmaros; Séverine Vermeire
Journal:  Front Microbiol       Date:  2021-05-11       Impact factor: 5.640

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