Literature DB >> 21429146

Multiplex reactions for the molecular detection of predation on pest and nonpest invertebrates in agroecosystems.

R Andrew King1, Rafael Moreno-Ripoll, Nuria Agustí, Simon P Shayler, James R Bell, David A Bohan, William O C Symondson.   

Abstract

Species- and group-specific PCR primers were developed to study predation on pest and nonpest invertebrate species by generalist carabid predators in agroecosystems. To ensure the amplification of degraded DNA in predator gut samples, amplicons were designed to be less than 300 bp. Specificity of primers was assessed by cross-amplification against a panel of target and nontarget invertebrate species. The new primers were combined with previously published primers for slugs and collembolla in multiplex reactions to simultaneously screen each predator for the presence of multiple prey. All prey species were detected in a screen of the gut contents of field-caught predators.
© 2010 Blackwell Publishing Ltd.

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Year:  2010        PMID: 21429146     DOI: 10.1111/j.1755-0998.2010.02913.x

Source DB:  PubMed          Journal:  Mol Ecol Resour        ISSN: 1755-098X            Impact factor:   7.090


  10 in total

1.  Advances in multiplex PCR: balancing primer efficiencies and improving detection success.

Authors:  Daniela Sint; Lorna Raso; Michael Traugott
Journal:  Methods Ecol Evol       Date:  2012-10       Impact factor: 7.781

2.  Rapid plant identification using species- and group-specific primers targeting chloroplast DNA.

Authors:  Corinna Wallinger; Anita Juen; Karin Staudacher; Nikolaus Schallhart; Evi Mitterrutzner; Eva-Maria Steiner; Bettina Thalinger; Michael Traugott
Journal:  PLoS One       Date:  2012-01-12       Impact factor: 3.240

3.  Sliding window analyses for optimal selection of mini-barcodes, and application to 454-pyrosequencing for specimen identification from degraded DNA.

Authors:  Stephane Boyer; Samuel D J Brown; Rupert A Collins; Robert H Cruickshank; Marie-Caroline Lefort; Jagoba Malumbres-Olarte; Stephen D Wratten
Journal:  PLoS One       Date:  2012-05-29       Impact factor: 3.240

4.  Molecular diagnosis of bird-mediated pest consumption in tropical farmland.

Authors:  Daniel S Karp; Seth Judson; Gretchen C Daily; Elizabeth A Hadly
Journal:  Springerplus       Date:  2014-10-24

5.  Group-specific multiplex PCR detection systems for the identification of flying insect prey.

Authors:  Daniela Sint; Bettina Niederklapfer; Ruediger Kaufmann; Michael Traugott
Journal:  PLoS One       Date:  2014-12-19       Impact factor: 3.240

6.  Diagnostic PCR assays to unravel food web interactions in cereal crops with focus on biological control of aphids.

Authors:  Karin Staudacher; Mattias Jonsson; Michael Traugott
Journal:  J Pest Sci (2004)       Date:  2015-08-11       Impact factor: 5.918

Review 7.  Methods to identify the prey of invertebrate predators in terrestrial field studies.

Authors:  Klaus Birkhofer; Helena Bylund; Peter Dalin; Olga Ferlian; Vesna Gagic; Peter A Hambäck; Maartje Klapwijk; Laia Mestre; Eve Roubinet; Martin Schroeder; Johan A Stenberg; Mario Porcel; Christer Björkman; Mattias Jonsson
Journal:  Ecol Evol       Date:  2017-02-22       Impact factor: 2.912

8.  When to use next generation sequencing or diagnostic PCR in diet analyses.

Authors:  Oskar Rennstam Rubbmark; Daniela Sint; Sandra Cupic; Michael Traugott
Journal:  Mol Ecol Resour       Date:  2019-02-04       Impact factor: 7.090

9.  Using next-generation sequencing to analyse the diet of a highly endangered land snail (Powelliphanta augusta) feeding on endemic earthworms.

Authors:  Stéphane Boyer; Stephen D Wratten; Andrew Holyoake; Jawad Abdelkrim; Robert H Cruickshank
Journal:  PLoS One       Date:  2013-09-27       Impact factor: 3.240

Review 10.  High-throughput sequencing for community analysis: the promise of DNA barcoding to uncover diversity, relatedness, abundances and interactions in spider communities.

Authors:  Susan R Kennedy; Stefan Prost; Isaac Overcast; Andrew J Rominger; Rosemary G Gillespie; Henrik Krehenwinkel
Journal:  Dev Genes Evol       Date:  2020-02-10       Impact factor: 0.900

  10 in total

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