Literature DB >> 21428953

DNA acting like RNA.

Robert V Brown1, Laurence H Hurley.   

Abstract

Over the last decade or so, secondary non-B-DNA structures such as G-quadruplexes and i-motifs have come into focus as biologically functioning moieties that are potentially involved in telomeric interactions and the control of gene expression. In the present short review, we first describe the structural and dynamic parallels with complex RNA structures, including the importance of sequence and ions in folding, and then we describe the biological consequences of the folded structures. We conclude that there are considerable parallels between secondary and tertiary structures in RNA and DNA from both the folding and the biological perspectives.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21428953      PMCID: PMC3074478          DOI: 10.1042/BST0390635

Source DB:  PubMed          Journal:  Biochem Soc Trans        ISSN: 0300-5127            Impact factor:   5.407


  51 in total

1.  Assaying RNA chaperone activity in vivo using a novel RNA folding trap.

Authors:  E Clodi; K Semrad; R Schroeder
Journal:  EMBO J       Date:  1999-07-01       Impact factor: 11.598

Review 2.  RNA folding in vivo.

Authors:  Renée Schroeder; Rupert Grossberger; Andrea Pichler; Christina Waldsich
Journal:  Curr Opin Struct Biol       Date:  2002-06       Impact factor: 6.809

3.  Molecular structure of nucleic acids; a structure for deoxyribose nucleic acid.

Authors:  J D WATSON; F H CRICK
Journal:  Nature       Date:  1953-04-25       Impact factor: 49.962

Review 4.  A guide to ions and RNA structure.

Authors:  David E Draper
Journal:  RNA       Date:  2004-03       Impact factor: 4.942

5.  Friction and torque govern the relaxation of DNA supercoils by eukaryotic topoisomerase IB.

Authors:  Daniel A Koster; Vincent Croquette; Cees Dekker; Stewart Shuman; Nynke H Dekker
Journal:  Nature       Date:  2005-03-31       Impact factor: 49.962

Review 6.  RNA folding: thermodynamic and molecular descriptions of the roles of ions.

Authors:  David E Draper
Journal:  Biophys J       Date:  2008-10-03       Impact factor: 4.033

Review 7.  Making sense of G-quadruplex and i-motif functions in oncogene promoters.

Authors:  Tracy A Brooks; Samantha Kendrick; Laurence Hurley
Journal:  FEBS J       Date:  2010-07-29       Impact factor: 5.542

8.  Molecular structure of a left-handed double helical DNA fragment at atomic resolution.

Authors:  A H Wang; G J Quigley; F J Kolpak; J L Crawford; J H van Boom; G van der Marel; A Rich
Journal:  Nature       Date:  1979-12-13       Impact factor: 49.962

9.  The role of G-quadruplex/i-motif secondary structures as cis-acting regulatory elements.

Authors:  Samantha Kendrick; Laurence H Hurley
Journal:  Pure Appl Chem       Date:  2010-01-01       Impact factor: 2.453

10.  The functional response of upstream DNA to dynamic supercoiling in vivo.

Authors:  Fedor Kouzine; Suzanne Sanford; Zichrini Elisha-Feil; David Levens
Journal:  Nat Struct Mol Biol       Date:  2008-01-13       Impact factor: 15.369

View more
  6 in total

1.  The Consequences of Overlapping G-Quadruplexes and i-Motifs in the Platelet-Derived Growth Factor Receptor β Core Promoter Nuclease Hypersensitive Element Can Explain the Unexpected Effects of Mutations and Provide Opportunities for Selective Targeting of Both Structures by Small Molecules To Downregulate Gene Expression.

Authors:  Robert V Brown; Ting Wang; Venkateshwar Reddy Chappeta; Guanhui Wu; Buket Onel; Reena Chawla; Hector Quijada; Sara M Camp; Eddie T Chiang; Quinea R Lassiter; Carmen Lee; Shivani Phanse; Megan A Turnidge; Ping Zhao; Joe G N Garcia; Vijay Gokhale; Danzhou Yang; Laurence H Hurley
Journal:  J Am Chem Soc       Date:  2017-05-19       Impact factor: 15.419

2.  Unusual Isothermal Hysteresis in DNA i-Motif pH Transitions: A Study of the RAD17 Promoter Sequence.

Authors:  R Aaron Rogers; Aaron M Fleming; Cynthia J Burrows
Journal:  Biophys J       Date:  2018-04-24       Impact factor: 4.033

3.  Finding and characterizing the complexes of drug like molecules with quadruplex DNA: combined use of an enhanced hydroxyl radical cleavage protocol and NMR.

Authors:  Harikrushan Ranpura; Dobroslawa Bialonska; Philip H Bolton
Journal:  PLoS One       Date:  2014-04-24       Impact factor: 3.240

4.  Intragenic G-quadruplex structure formed in the human CD133 and its biological and translational relevance.

Authors:  Pasquale Zizza; Chiara Cingolani; Simona Artuso; Erica Salvati; Angela Rizzo; Carmen D'Angelo; Manuela Porru; Bruno Pagano; Jussara Amato; Antonio Randazzo; Ettore Novellino; Antonella Stoppacciaro; Eric Gilson; Giorgio Stassi; Carlo Leonetti; Annamaria Biroccio
Journal:  Nucleic Acids Res       Date:  2015-10-27       Impact factor: 16.971

5.  Unique properties of spacer acquisition by the type III-A CRISPR-Cas system.

Authors:  Xinfu Zhang; Sandra Garrett; Brenton R Graveley; Michael P Terns
Journal:  Nucleic Acids Res       Date:  2022-02-22       Impact factor: 16.971

6.  The transcriptional complex between the BCL2 i-motif and hnRNP LL is a molecular switch for control of gene expression that can be modulated by small molecules.

Authors:  Hyun-Jin Kang; Samantha Kendrick; Sidney M Hecht; Laurence H Hurley
Journal:  J Am Chem Soc       Date:  2014-03-07       Impact factor: 15.419

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.