Literature DB >> 21426897

Probing the allosteric activation of pyruvate carboxylase using 2',3'-O-(2,4,6-trinitrophenyl) adenosine 5'-triphosphate as a fluorescent mimic of the allosteric activator acetyl CoA.

Abdussalam Adina-Zada1, Rasmani Hazra, Chutima Sereeruk, Sarawut Jitrapakdee, Tonya N Zeczycki, Martin St Maurice, W Wallace Cleland, John C Wallace, Paul V Attwood.   

Abstract

2',3'-O-(2,4,6-Trinitrophenyl) adenosine 5'-triphosphate (TNP-ATP) is a fluorescent analogue of ATP. MgTNP-ATP was found to be an allosteric activator of pyruvate carboxylase that exhibits competition with acetyl CoA in activating the enzyme. There is no evidence that MgTNP-ATP binds to the MgATP substrate binding site of the enzyme. At concentrations above saturating, MgATP activates bicarbonate-dependent ATP cleavage, but inhibits the overall reaction. The fluorescence of MgTNP-ATP increases by about 2.5-fold upon binding to the enzyme and decreases on addition of saturating acetyl CoA. However, not all the MgTNP-ATP is displaced by acetyl CoA, or with a combination of saturating concentrations of MgATP and acetyl CoA. The kinetics of the binding of MgTNP-ATP to pyruvate carboxylase have been measured and shown to be triphasic, with the two fastest phases having pseudo first-order rate constants that are dependent on the concentration of MgTNP-ATP. The kinetics of displacement from the enzyme by acetyl CoA have been measured and also shown to be triphasic. A model of the binding process is proposed that links the kinetics of MgTNP-ATP binding to the allosteric activation of the enzyme.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 21426897      PMCID: PMC3238500          DOI: 10.1016/j.abb.2011.03.006

Source DB:  PubMed          Journal:  Arch Biochem Biophys        ISSN: 0003-9861            Impact factor:   4.013


  28 in total

1.  Effects of Mg(2+) on the pre-steady-state kinetics of the biotin carboxylation reaction of pyruvate carboxylase.

Authors:  J P Branson; P V Attwood
Journal:  Biochemistry       Date:  2000-06-27       Impact factor: 3.162

2.  Function of Escherichia coli biotin carboxylase requires catalytic activity of both subunits of the homodimer.

Authors:  K Janiyani; T Bordelon; G L Waldrop; J E Cronan
Journal:  J Biol Chem       Date:  2001-06-04       Impact factor: 5.157

3.  Probing the catalytic roles of Arg548 and Gln552 in the carboxyl transferase domain of the Rhizobium etli pyruvate carboxylase by site-directed mutagenesis.

Authors:  Saowapa Duangpan; Sarawut Jitrapakdee; Abdussalam Adina-Zada; Lindsay Byrne; Tonya N Zeczycki; Martin St Maurice; W Wallace Cleland; John C Wallace; Paul V Attwood
Journal:  Biochemistry       Date:  2010-04-20       Impact factor: 3.162

4.  Kinetic characterization of yeast pyruvate carboxylase isozyme pyc1.

Authors:  Joy P Branson; Mark Nezic; John C Wallace; Paul V Attwood
Journal:  Biochemistry       Date:  2002-04-02       Impact factor: 3.162

5.  Assay of ATP in intact cells of the facultative phototroph Rhodobacter capsulatus expressing recombinant firefly luciferase.

Authors:  G Di Tomaso; R Borghese; D Zannoni
Journal:  Arch Microbiol       Date:  2001-10-03       Impact factor: 2.552

Review 6.  Chemical and catalytic mechanisms of carboxyl transfer reactions in biotin-dependent enzymes.

Authors:  Paul V Attwood; John C Wallace
Journal:  Acc Chem Res       Date:  2002-02       Impact factor: 22.384

Review 7.  Structure, mechanism and regulation of pyruvate carboxylase.

Authors:  Sarawut Jitrapakdee; Martin St Maurice; Ivan Rayment; W Wallace Cleland; John C Wallace; Paul V Attwood
Journal:  Biochem J       Date:  2008-08-01       Impact factor: 3.857

8.  Changes in catalytic activity and association state of pyruvate carboxylase which are dependent on enzyme concentration.

Authors:  Paul V Attwood; Michael A Geeves
Journal:  Arch Biochem Biophys       Date:  2002-05-01       Impact factor: 4.013

9.  Structural evidence for substrate-induced synergism and half-sites reactivity in biotin carboxylase.

Authors:  Igor Mochalkin; J Richard Miller; Artem Evdokimov; Sandra Lightle; Chunhong Yan; Charles Ken Stover; Grover L Waldrop
Journal:  Protein Sci       Date:  2008-08-25       Impact factor: 6.725

10.  ATP-dependent reduction of cysteine-sulphinic acid by S. cerevisiae sulphiredoxin.

Authors:  Benoît Biteau; Jean Labarre; Michel B Toledano
Journal:  Nature       Date:  2003-10-30       Impact factor: 49.962

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  6 in total

Review 1.  Regulation of the structure and activity of pyruvate carboxylase by acetyl CoA.

Authors:  Abdussalam Adina-Zada; Tonya N Zeczycki; Paul V Attwood
Journal:  Arch Biochem Biophys       Date:  2011-11-19       Impact factor: 4.013

2.  Interaction between the biotin carboxyl carrier domain and the biotin carboxylase domain in pyruvate carboxylase from Rhizobium etli.

Authors:  Adam D Lietzan; Ann L Menefee; Tonya N Zeczycki; Sudhanshu Kumar; Paul V Attwood; John C Wallace; W Wallace Cleland; Martin St Maurice
Journal:  Biochemistry       Date:  2011-10-18       Impact factor: 3.162

3.  Novel insights into the biotin carboxylase domain reactions of pyruvate carboxylase from Rhizobium etli.

Authors:  Tonya N Zeczycki; Ann L Menefee; Abdussalam Adina-Zada; Sarawut Jitrapakdee; Kathy H Surinya; John C Wallace; Paul V Attwood; Martin St Maurice; W Wallace Cleland
Journal:  Biochemistry       Date:  2011-10-13       Impact factor: 3.162

4.  Roles of Arg427 and Arg472 in the binding and allosteric effects of acetyl CoA in pyruvate carboxylase.

Authors:  Abdussalam Adina-Zada; Chutima Sereeruk; Sarawut Jitrapakdee; Tonya N Zeczycki; Martin St Maurice; W Wallace Cleland; John C Wallace; Paul V Attwood
Journal:  Biochemistry       Date:  2012-10-02       Impact factor: 3.162

Review 5.  Structure and function of biotin-dependent carboxylases.

Authors:  Liang Tong
Journal:  Cell Mol Life Sci       Date:  2012-08-07       Impact factor: 9.261

6.  Mechanisms of inhibition of Rhizobium etli pyruvate carboxylase by L-aspartate.

Authors:  Chaiyos Sirithanakorn; Abdussalam Adina-Zada; John C Wallace; Sarawut Jitrapakdee; Paul V Attwood
Journal:  Biochemistry       Date:  2014-11-06       Impact factor: 3.162

  6 in total

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