Literature DB >> 21425173

Validated primer set that prevents nuclear DNA sequences of mitochondrial origin co-amplification: a revision based on the New Human Genome Reference Sequence (GRCh37).

Amanda Ramos1, Cristina Santos, Elena Barbena, Ligia Mateiu, Luis Alvarez, Ramon Nogués, Maria Pilar Aluja.   

Abstract

A new human genome reference sequence--GRCh37--was recently generated and made available by the Genome Reference Consortium. Since the prior disposable human reference sequence--hg18--was previously used for the mitochondrial DNA primer BLAST validation, a revision of those previously published primer pairs is required. Thus, the aim of this Short Communication is to perform an in silico BLAST test of the published disposable nine primer pairs using the new human reference sequence and to report the pertinent modifications. The new analysis showed that one of the tested primer pairs requires a revision. Therefore, a new validated primer pair, which specifically amplifies the mitochondrial region located between positions 6520 and 9184, is presented.
Copyright © 2011 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21425173     DOI: 10.1002/elps.201000583

Source DB:  PubMed          Journal:  Electrophoresis        ISSN: 0173-0835            Impact factor:   3.535


  11 in total

1.  Echoes from Sepharad: signatures on the maternal gene pool of crypto-Jewish descendants.

Authors:  Inês Nogueiro; João Teixeira; António Amorim; Leonor Gusmão; Luis Alvarez
Journal:  Eur J Hum Genet       Date:  2014-07-30       Impact factor: 4.246

2.  Whole-mitochondrial genome sequencing in primary open-angle glaucoma using massively parallel sequencing identifies novel and known pathogenic variants.

Authors:  Periasamy Sundaresan; David A Simpson; Chitra Sambare; Seamus Duffy; Judith Lechner; Aditi Dastane; Edward W Dervan; Neeru Vallabh; Vidya Chelerkar; Madan Deshpande; Colm O'Brien; Amy Jayne McKnight; Colin E Willoughby
Journal:  Genet Med       Date:  2014-09-18       Impact factor: 8.822

3.  Alterations in glycolytic/cholesterogenic gene expression in hepatocellular carcinoma.

Authors:  Jianwen Jiang; Qiuxian Zheng; Weiwei Zhu; Xinhua Chen; Haifeng Lu; Deying Chen; Hua Zhang; Min Shao; Lin Zhou; Shusen Zheng
Journal:  Aging (Albany NY)       Date:  2020-06-01       Impact factor: 5.682

4.  Frequency and pattern of heteroplasmy in the complete human mitochondrial genome.

Authors:  Amanda Ramos; Cristina Santos; Ligia Mateiu; Maria del Mar Gonzalez; Luis Alvarez; Luisa Azevedo; António Amorim; Maria Pilar Aluja
Journal:  PLoS One       Date:  2013-10-02       Impact factor: 3.240

5.  Interference of Co-amplified nuclear mitochondrial DNA sequences on the determination of human mtDNA heteroplasmy by Using the SURVEYOR nuclease and the WAVE HS system.

Authors:  Hsiu-Chuan Yen; Shiue-Li Li; Wei-Chien Hsu; Petrus Tang
Journal:  PLoS One       Date:  2014-03-24       Impact factor: 3.240

6.  Mitochondrial DNA subhaplogroups L0a2 and L2a modify susceptibility to peripheral neuropathy in malawian adults on stavudine containing highly active antiretroviral therapy.

Authors:  Elizabeth Kampira; Johnstone Kumwenda; Joep J van Oosterhout; Collet Dandara
Journal:  J Acquir Immune Defic Syndr       Date:  2013-08-15       Impact factor: 3.731

7.  Next-generation sequencing of the mitochondrial genome and association with IgA nephropathy in a renal transplant population.

Authors:  Adam P Douglas; Dwaine R Vance; Elaine M Kenny; Derek W Morris; Alexander P Maxwell; Amy Jayne McKnight
Journal:  Sci Rep       Date:  2014-12-09       Impact factor: 4.379

8.  Mitochondrial Haplogroup Influences Motor Function in Long-Term HIV-1-Infected Individuals.

Authors:  Ashley Azar; Kathryn Devlin; Joshua Chang Mell; Tania Giovannetti; Vanessa Pirrone; Michael R Nonnemacher; Shendra Passic; Katherine Kercher; Jean W Williams; Jeffery M Jacobson; Brian Wigdahl; William Dampier; David J Libon; Christian Sell
Journal:  PLoS One       Date:  2016-10-06       Impact factor: 3.240

9.  Sensitive detection of mitochondrial DNA variants for analysis of mitochondrial DNA-enriched extracts from frozen tumor tissue.

Authors:  M J A Weerts; E C Timmermans; R H A M Vossen; D van Strijp; M C G N Van den Hout-van Vroonhoven; W F J van IJcken; P J van der Zaag; S Y Anvar; S Sleijfer; J W M Martens
Journal:  Sci Rep       Date:  2018-02-02       Impact factor: 4.379

10.  Next-generation sequencing identifies novel mitochondrial variants in pituitary adenomas.

Authors:  K Németh; O Darvasi; I Likó; N Szücs; S Czirják; L Reiniger; B Szabó; P A Kurucz; L Krokker; P Igaz; A Patócs; H Butz
Journal:  J Endocrinol Invest       Date:  2019-01-25       Impact factor: 4.256

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.