Literature DB >> 21423995

Halogen as halogen-bonding donor and hydrogen-bonding acceptor simultaneously in ring-shaped H3N·X(Y)·HF (X = Cl, Br and Y = F, Cl, Br) complexes.

Pan-Pan Zhou1, Wen-Yuan Qiu, Shubin Liu, Neng-Zhi Jin.   

Abstract

A series of ring-shaped molecular complexes formed by H(3)N, HF and XY (X = Cl, Br and Y = F, Cl, Br) have been investigated at the MP2/aug-cc-pVTZ level of theory. Their optimized geometry, stretching mode, and interaction energy have been obtained. We found that each complex possesses two red-shifted hydrogen bonds and one red-shifted halogen bond, and the two hydrogen bonds exhibit strong cooperative effects on the halogen bond. The cooperativity among the NH(3)···FH, FH···XY and H(3)N···XY interactions leads to the formations of these complexes. The AIM analysis has been performed at the CCSD(T)/aug-cc-pVQZ level of theory to examine the topological characteristics at the bond critical point and at the ring critical point, confirming the coexistence of the two hydrogen bonds and one halogen bond for each complex. The NBO analysis carried out at the B3LYP/aug-cc-pVTZ level of theory demonstrates the effects of hyperconjugation, hybridization, and polarization coming into play during the hydrogen and halogen bonding formations processes, based on which a clockwise loop of charge transfer was discovered. The molecular electrostatic potential has been employed to explore the formation mechanisms of these molecular complexes.

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Year:  2011        PMID: 21423995     DOI: 10.1039/c1cp00025j

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  10 in total

1.  Force Fields for Small Molecules.

Authors:  Fang-Yu Lin; Alexander D MacKerell
Journal:  Methods Mol Biol       Date:  2019

2.  Polarizable Empirical Force Field for Halogen-Containing Compounds Based on the Classical Drude Oscillator.

Authors:  Fang-Yu Lin; Alexander D MacKerell
Journal:  J Chem Theory Comput       Date:  2018-01-31       Impact factor: 6.006

3.  How do halogen bonds (S-O⋯I, N-O⋯I and C-O⋯I) and halogen-halogen contacts (C-I⋯I-C, C-F⋯F-C) subsist in crystal structures? A quantum chemical insight.

Authors:  B Vijaya Pandiyan; P Deepa; P Kolandaivel
Journal:  J Mol Model       Date:  2016-12-29       Impact factor: 1.810

4.  Do Halogen-Hydrogen Bond Donor Interactions Dominate the Favorable Contribution of Halogens to Ligand-Protein Binding?

Authors:  Fang-Yu Lin; Alexander D MacKerell
Journal:  J Phys Chem B       Date:  2017-07-11       Impact factor: 2.991

5.  Rigorous sampling of docking poses unveils binding hypothesis for the halogenated ligands of L-type Amino acid Transporter 1 (LAT1).

Authors:  Natesh Singh; Bruno O Villoutreix; Gerhard F Ecker
Journal:  Sci Rep       Date:  2019-10-21       Impact factor: 4.379

6.  Chalcogen Bonding in the Molecular Dimers of WCh2 (Ch = S, Se, Te): On the Basic Understanding of the Local Interfacial and Interlayer Bonding Environment in 2D Layered Tungsten Dichalcogenides.

Authors:  Pradeep R Varadwaj; Arpita Varadwaj; Helder M Marques; Koichi Yamashita
Journal:  Int J Mol Sci       Date:  2022-01-23       Impact factor: 5.923

7.  Halogen-Based 17β-HSD1 Inhibitors: Insights from DFT, Docking, and Molecular Dynamics Simulation Studies.

Authors:  Arulsamy Kulandaisamy; Murugesan Panneerselvam; Rajadurai Vijay Solomon; Madhavan Jaccob; Jaganathan Ramakrishnan; Kumaradhas Poomani; Muralikannan Maruthamuthu; Nagendran Tharmalingam
Journal:  Molecules       Date:  2022-06-20       Impact factor: 4.927

Review 8.  Insights into the Structure, Function, and Ligand Discovery of the Large Neutral Amino Acid Transporter 1, LAT1.

Authors:  Natesh Singh; Gerhard F Ecker
Journal:  Int J Mol Sci       Date:  2018-04-24       Impact factor: 5.923

9.  The intramolecular hydrogen bonded-halogen bond: a new strategy for preorganization and enhanced binding.

Authors:  Asia Marie S Riel; Daniel A Decato; Jiyu Sun; Casey J Massena; Morly J Jessop; Orion B Berryman
Journal:  Chem Sci       Date:  2018-06-21       Impact factor: 9.825

10.  Nature of the Interaction of Pyridines with OCS. A Theoretical Investigation.

Authors:  Sumitra Bhattarai; Dipankar Sutradhar; Asit K Chandra; Therese Zeegers-Huyskens
Journal:  Molecules       Date:  2020-01-19       Impact factor: 4.411

  10 in total

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