Literature DB >> 21423885

Molecular identification of Mango, Mangifera indica L.var. totupura.

Sankar Jagarlamudi, Rosaiah G, Ravi Kumar Kurapati, Rajasekhar Pinnamaneni.   

Abstract

UNLABELLED: Mango (>Mangifera indica) belonging to Anacardiaceae family is a fruit that grows in tropical regions. It is considered as the King of fruits. The present work was taken up to identify a tool in identifying the mango species at the molecular level. The chloroplast trnL-F region was amplified from extracted total genomic DNA using the polymerase chain reaction (PCR) and sequenced. Sequence of the dominant DGGE band revealed that Mangifera indica in tested leaves was Mangifera indica (100% similarity to the ITS sequences of Mangifera indica). This sequence was deposited in NCBI with the accession no. GQ927757. ABBREVIATIONS: AFLP - Amplified fragment length polymorphism , cpDNA - Chloroplast DNA, DDGE - Denaturing gradient gel electrophoresis, DNA - Deoxyribo nucleic acid, EDTA - Ethylenediamine tetraacetic acid, HCl - Hydrochloric acid, ISSR - Inter simple sequence repeats, ITS - Internal transcribed spacer, MATAB - Methyl Ammonium Bromide, Na(2)SO(3) - Sodium sulphite, NaCl - Sodium chloride, NCBI - National Centre for Biotechnology Information, PCR - Polymerase chain reaction, PEG - Polyethylene glycol, RAPD - Randomly amplified polymorphic DNA, trnL-F - Transfer RNA genes start codon- termination codon.

Entities:  

Keywords:  Mangifera indica; Mango; trnL-F

Year:  2011        PMID: 21423885      PMCID: PMC3055156          DOI: 10.6026/97320630005405

Source DB:  PubMed          Journal:  Bioinformation        ISSN: 0973-2063


  9 in total

1.  The cyanobacterial origin and vertical transmission of the plastid tRNA(Leu) group-I intron.

Authors:  A Besendahl; Y L Qiu; J Lee; J D Palmer; D Bhattacharya
Journal:  Curr Genet       Date:  2000-01       Impact factor: 3.886

2.  Patterns of nucleotide substitution in angiosperm cpDNA trnL (UAA)-trnF (GAA) regions.

Authors:  F T Bakker; A Culham; R Gomez-Martinez; J Carvalho; J Compton; R Dawtrey; M Gibby
Journal:  Mol Biol Evol       Date:  2000-08       Impact factor: 16.240

3.  Noncoding plastid trnT-trnF sequences reveal a well resolved phylogeny of basal angiosperms.

Authors:  T Borsch; K W Hilu; D Quandt; V Wilde; C Neinhuis; W Barthlott
Journal:  J Evol Biol       Date:  2003-07       Impact factor: 2.411

4.  Historical biogeography of two cosmopolitan families of flowering plants: Annonaceae and Rhamnaceae.

Authors:  J E Richardson; L W Chatrou; J B Mols; R H J Erkens; M D Pirie
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2004-10-29       Impact factor: 6.237

5.  The chloroplast trnT-trnF region in the seed plant lineage Gnetales.

Authors:  Hyosig Won; Susanne S Renner
Journal:  J Mol Evol       Date:  2005-09-12       Impact factor: 2.395

6.  Universal primers for amplification of three non-coding regions of chloroplast DNA.

Authors:  P Taberlet; L Gielly; G Pautou; J Bouvet
Journal:  Plant Mol Biol       Date:  1991-11       Impact factor: 4.076

7.  Identification of cultivars and validation of genetic relationships in Mangifera indica L. using RAPD markers.

Authors:  R J Schnell; C M Ronning; R J Knight
Journal:  Theor Appl Genet       Date:  1995-02       Impact factor: 5.699

Review 8.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Authors:  S F Altschul; T L Madden; A A Schäffer; J Zhang; Z Zhang; W Miller; D J Lipman
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

9.  Molecular evolution of the trnTUGU-trnFGAA region in Bryophytes.

Authors:  D Quandt; M Stech
Journal:  Plant Biol (Stuttg)       Date:  2004-09       Impact factor: 3.081

  9 in total

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