Literature DB >> 21419158

Mathematical descriptions of biochemical networks: stability, stochasticity, evolution.

Simon Rosenfeld1.   

Abstract

In this paper, we review some fundamental aspects, as well as some new developments, in the emerging field of network biology. The focus of attention is placed on mathematical approaches to conceptual modeling of biomolecular networks with special emphasis on dynamic stability, stochasticity and evolution. Published by Elsevier Ltd.

Entities:  

Mesh：

Year:  2011        PMID： 21419158      PMCID： PMC3154973          DOI： 10.1016/j.pbiomolbio.2011.03.003

Source DB:  PubMed          Journal:  Prog Biophys Mol Biol        ISSN： 0079-6107            Impact factor:   3.667


  84 in total

1.  Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations.

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2.  Network motifs: simple building blocks of complex networks.

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4.  Tools for kinetic modeling of biochemical networks.

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Journal:  Nat Biotechnol       Date:  2006-06       Impact factor: 54.908

5.  RNA-dependent DNA polymerase in virions of Rous sarcoma virus.

Authors:  H M Temin; S Mizutani
Journal:  Nature       Date:  1970-06-27       Impact factor: 49.962

Review 6.  Cancer as an evolutionary and ecological process.

Authors:  Lauren M F Merlo; John W Pepper; Brian J Reid; Carlo C Maley
Journal:  Nat Rev Cancer       Date:  2006-11-16       Impact factor: 60.716

7.  RNA dynamics in live Escherichia coli cells.

Authors:  Ido Golding; Edward C Cox
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-26       Impact factor: 11.205

8.  Characterizing disease states from topological properties of transcriptional regulatory networks.

Authors:  David P Tuck; Harriet M Kluger; Yuval Kluger
Journal:  BMC Bioinformatics       Date:  2006-05-02       Impact factor: 3.169

9.  Dynamic remodeling of individual nucleosomes across a eukaryotic genome in response to transcriptional perturbation.

Authors:  Sushma Shivaswamy; Akshay Bhinge; Yongjun Zhao; Steven Jones; Martin Hirst; Vishwanath R Iyer
Journal:  PLoS Biol       Date:  2008-03-18       Impact factor: 8.029

10.  Erwin Schroedinger, Francis Crick and epigenetic stability.

Authors:  Vasily V Ogryzko
Journal:  Biol Direct       Date:  2008-04-17       Impact factor: 4.540
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  8 in total

Review 1.  Functional Implications of Cardiac Mitochondria Clustering.

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2.  Systems biology and cancer.

Authors:  Ana M Soto; Carlos Sonnenschein; Philip K Maini; Denis Noble
Journal:  Prog Biophys Mol Biol       Date:  2011-08       Impact factor: 3.667

3.  Biomolecular self-defense and futility of high-specificity therapeutic targeting.

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Journal:  Gene Regul Syst Bio       Date:  2011-11-21

Review 4.  Alien Mindscapes-A Perspective on the Search for Extraterrestrial Intelligence.

Authors:  Nathalie A Cabrol
Journal:  Astrobiology       Date:  2016-07-06       Impact factor: 4.335

5.  Genomic Variation, Evolvability, and the Paradox of Mental Illness.

Authors:  Camillo Thomas Gualtieri
Journal:  Front Psychiatry       Date:  2021-01-21       Impact factor: 4.157

6.  Global consensus theorem and self-organized criticality: unifying principles for understanding self-organization, swarm intelligence and mechanisms of carcinogenesis.

Authors:  Simon Rosenfeld
Journal:  Gene Regul Syst Bio       Date:  2013-02-20

7.  Are the somatic mutation and tissue organization field theories of carcinogenesis incompatible?

Authors:  Simon Rosenfeld
Journal:  Cancer Inform       Date:  2013-12-01

8.  The intelligence paradox; will ET get the metabolic syndrome? Lessons from and for Earth.

Authors:  Alistair V W Nunn; Geoffrey W Guy; Jimmy D Bell
Journal:  Nutr Metab (Lond)       Date:  2014-07-29       Impact factor: 4.169
  8 in total

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