Literature DB >> 21419138

Gene circuit designs for noisy excitable dynamics.

Pau Rué1, Jordi Garcia-Ojalvo.   

Abstract

Certain cellular processes take the form of activity pulses that can be interpreted in terms of noise-driven excitable dynamics. Here we present an overview of different gene circuit architectures that exhibit excitable pulses of protein expression, when subject to molecular noise. Different types of excitable dynamics can occur depending on the bifurcation structure leading to the specific excitable phase-space topology. The bifurcation structure is not, however, linked to a particular circuit architecture. Thus a given gene circuit design can sustain different classes of excitable dynamics depending on the system parameters.
Copyright © 2011 Elsevier Inc. All rights reserved.

Mesh:

Year:  2011        PMID: 21419138     DOI: 10.1016/j.mbs.2011.02.013

Source DB:  PubMed          Journal:  Math Biosci        ISSN: 0025-5564            Impact factor:   2.144


  7 in total

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Authors:  Eder Zavala; Tatiana T Marquez-Lago
Journal:  Biophys J       Date:  2014-01-21       Impact factor: 4.033

2.  Functional tunability of biological circuits from additional toggle switches.

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3.  A design principle of group-level decision making in cell populations.

Authors:  Koichi Fujimoto; Satoshi Sawai
Journal:  PLoS Comput Biol       Date:  2013-06-27       Impact factor: 4.475

4.  Emergent bimodal firing patterns implement different encoding strategies during gamma-band oscillations.

Authors:  B Sancristóbal; R Vicente; J M Sancho; J Garcia-Ojalvo
Journal:  Front Comput Neurosci       Date:  2013-03-26       Impact factor: 2.380

5.  Excitability in the p53 network mediates robust signaling with tunable activation thresholds in single cells.

Authors:  Gregor Mönke; Elena Cristiano; Ana Finzel; Dhana Friedrich; Hanspeter Herzel; Martin Falcke; Alexander Loewer
Journal:  Sci Rep       Date:  2017-04-18       Impact factor: 4.379

6.  Excitable dynamics through toxin-induced mRNA cleavage in bacteria.

Authors:  Stefan Vet; Alexandra Vandervelde; Lendert Gelens
Journal:  PLoS One       Date:  2019-02-22       Impact factor: 3.240

7.  Dynamic cross-regulation of antigen-specific effector and regulatory T cell subpopulations and microglia in brain autoimmunity.

Authors:  Sara Martinez-Pasamar; Elena Abad; Beatriz Moreno; Nieves Velez de Mendizabal; Ivan Martinez-Forero; Jordi Garcia-Ojalvo; Pablo Villoslada
Journal:  BMC Syst Biol       Date:  2013-04-26
  7 in total

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