Literature DB >> 21416271

Computational analysis of a novel SACS gene mutation with BioExtract server.

Yosr Bouhlal1, Douglas M Jennewein, Brent Anderson, Joe Reynoldson, Wiem Maamouri, Fayçal Hentati, Rim Amouri, Carol Lushbough.   

Abstract

Autosomal recessive spastic ataxia of Charlevoix-Saguenay is a distinct form of hereditary early-onset spastic ataxia caused by cerebellum and spinal cord degeneration. The SACS gene has been demonstrated to be responsible for the disease through worldwide description of different mutations. We report here a computational analysis of a novel SACS gene mutation identified in a Tunisian family, using workflow implemented on the BioExtract Server. Several online computational tools are currently available to explore the effect of novel identified mutations in human and other organisms. Such analysis is time-consuming and generates a batch of files that researchers need to extract and save. The BioExtract Server workflow described here offers an easy way to execute the required tools together, avoiding entering queries independently in each web tool or service.

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Year:  2011        PMID: 21416271     DOI: 10.1007/s12031-011-9512-8

Source DB:  PubMed          Journal:  J Mol Neurosci        ISSN: 0895-8696            Impact factor:   3.444


  15 in total

1.  EMBOSS: the European Molecular Biology Open Software Suite.

Authors:  P Rice; I Longden; A Bleasby
Journal:  Trends Genet       Date:  2000-06       Impact factor: 11.639

2.  ARSACS, a spastic ataxia common in northeastern Québec, is caused by mutations in a new gene encoding an 11.5-kb ORF.

Authors:  J C Engert; P Bérubé; J Mercier; C Doré; P Lepage; B Ge; J P Bouchard; J Mathieu; S B Melançon; M Schalling; E S Lander; K Morgan; T J Hudson; A Richter
Journal:  Nat Genet       Date:  2000-02       Impact factor: 38.330

3.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

4.  GOR method for predicting protein secondary structure from amino acid sequence.

Authors:  J Garnier; J F Gibrat; B Robson
Journal:  Methods Enzymol       Date:  1996       Impact factor: 1.600

5.  The hydrophobic moment detects periodicity in protein hydrophobicity.

Authors:  D Eisenberg; R M Weiss; T C Terwilliger
Journal:  Proc Natl Acad Sci U S A       Date:  1984-01       Impact factor: 11.205

6.  Autosomal recessive spastic ataxia of Charlevoix-Saguenay.

Authors:  J P Bouchard; A Richter; J Mathieu; D Brunet; T J Hudson; K Morgan; S B Melançon
Journal:  Neuromuscul Disord       Date:  1998-10       Impact factor: 4.296

7.  Autosomal recessive ataxia caused by three distinct gene defects in a single consanguineous family.

Authors:  Yosr Bouhlal; Mourad Zouari; Mounir Kefi; Christiane Ben Hamida; Fayçal Hentati; Rim Amouri
Journal:  J Neurogenet       Date:  2008       Impact factor: 1.250

8.  Autosomal recessive spastic ataxia of Charlevoix-Saguenay.

Authors:  J P Bouchard; A Barbeau; R Bouchard; R W Bouchard
Journal:  Can J Neurol Sci       Date:  1978-02       Impact factor: 2.104

9.  Phenotypic features and genetic findings in sacsin-related autosomal recessive ataxia in Tunisia.

Authors:  Ghada El Euch-Fayache; Irfan Lalani; Rim Amouri; Ilhem Turki; Karim Ouahchi; Wu-Yen Hung; Samir Belal; Teepu Siddique; Faycal Hentati
Journal:  Arch Neurol       Date:  2003-07

10.  ARSACS in the Dutch population: a frequent cause of early-onset cerebellar ataxia.

Authors:  Sascha Vermeer; Rowdy P P Meijer; Benjamin J Pijl; Janneke Timmermans; Johannes R M Cruysberg; Maaike M Bos; Helenius J Schelhaas; Bart P C van de Warrenburg; Nine V A M Knoers; Hans Scheffer; Berry Kremer
Journal:  Neurogenetics       Date:  2008-05-09       Impact factor: 2.660

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