Literature DB >> 21410225

Photocaged variants of the MunI and PvuII restriction enzymes.

Arunas Silanskas1, Michael Foss, Wolfgang Wende, Claus Urbanke, Arunas Lagunavicius, Alfred Pingoud, Virginijus Siksnys.   

Abstract

Regulation of proteins by light is a new and promising strategy for the external control of biological processes. In this study, we demonstrate the ability to regulate the catalytic activity of the MunI and PvuII restriction endonucleases with light. We used two different approaches to attach a photoremovable caging compound, 2-nitrobenzyl bromide (NBB), to functionally important regions of the two enzymes. First, we covalently attached a caging molecule at the dimer interface of MunI to generate an inactive monomer. Second, we attached NBB at the DNA binding site of the single-chain variant of PvuII (scPvuII) to prevent binding and cleavage of the DNA substrate. Upon removal of the caging group by UV irradiation, nearly 50% of the catalytic activity of MunI and 80% of the catalytic activity of PvuII could be restored.

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Year:  2011        PMID: 21410225     DOI: 10.1021/bi2000609

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  7 in total

Review 1.  The past and presence of gene targeting: from chemicals and DNA via proteins to RNA.

Authors:  T M Geel; M H J Ruiters; R H Cool; L Halby; D C Voshart; L Andrade Ruiz; K E Niezen-Koning; P B Arimondo; M G Rots
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-06-05       Impact factor: 6.237

2.  Selective uncoupling of individual mitochondria within a cell using a mitochondria-targeted photoactivated protonophore.

Authors:  Susan Chalmers; Stuart T Caldwell; Caroline Quin; Tracy A Prime; Andrew M James; Andrew G Cairns; Michael P Murphy; John G McCarron; Richard C Hartley
Journal:  J Am Chem Soc       Date:  2011-12-30       Impact factor: 15.419

3.  A novel zinc-finger nuclease platform with a sequence-specific cleavage module.

Authors:  Benno Schierling; Nadine Dannemann; Lilia Gabsalilow; Wolfgang Wende; Toni Cathomen; Alfred Pingoud
Journal:  Nucleic Acids Res       Date:  2011-12-01       Impact factor: 16.971

4.  A study on endonuclease BspD6I and its stimulus-responsive switching by modified oligonucleotides.

Authors:  Liudmila A Abrosimova; Anzhela Yu Migur; Elena A Kubareva; Timofei S Zatsepin; Aleksandra V Gavshina; Alfiya K Yunusova; Tatiana A Perevyazova; Alfred Pingoud; Tatiana S Oretskaya
Journal:  PLoS One       Date:  2018-11-26       Impact factor: 3.240

Review 5.  Stimulus-Responsive Regulation of Enzyme Activity for One-Step and Multi-Step Syntheses.

Authors:  Christiane Claaßen; Tim Gerlach; Dörte Rother
Journal:  Adv Synth Catal       Date:  2019-04-15       Impact factor: 5.837

6.  A simple and general approach to generate photoactivatable DNA processing enzymes.

Authors:  Merve-Zeynep Kesici; Philip Tinnefeld; Andrés Manuel Vera
Journal:  Nucleic Acids Res       Date:  2022-04-08       Impact factor: 16.971

7.  TALE-PvuII fusion proteins--novel tools for gene targeting.

Authors:  Mert Yanik; Jamal Alzubi; Thomas Lahaye; Toni Cathomen; Alfred Pingoud; Wolfgang Wende
Journal:  PLoS One       Date:  2013-12-05       Impact factor: 3.240

  7 in total

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