Literature DB >> 21405439

Intrinsic noise in stochastic models of gene expression with molecular memory and bursting.

Tao Jia1, Rahul V Kulkarni.   

Abstract

Regulation of intrinsic noise in gene expression is essential for many cellular functions. Correspondingly, there is considerable interest in understanding how different molecular mechanisms of gene expression impact variations in protein levels across a population of cells. In this work, we analyze a stochastic model of bursty gene expression which considers general waiting-time distributions governing arrival and decay of proteins. By mapping the system to models analyzed in queueing theory, we derive analytical expressions for the noise in steady-state protein distributions. The derived results extend previous work by including the effects of arbitrary probability distributions representing the effects of molecular memory and bursting. The analytical expressions obtained provide insight into the role of transcriptional, post-transcriptional, and post-translational mechanisms in controlling the noise in gene expression.

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Year:  2011        PMID: 21405439     DOI: 10.1103/PhysRevLett.106.058102

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  26 in total

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2.  Queueing up for translation.

Authors:  Rahul V Kulkarni
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3.  Translational cross talk in gene networks.

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4.  Transient changes in intercellular protein variability identify sources of noise in gene expression.

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Journal:  Biophys J       Date:  2014-11-04       Impact factor: 4.033

5.  Stochastic gene expression conditioned on large deviations.

Authors:  Jordan M Horowitz; Rahul V Kulkarni
Journal:  Phys Biol       Date:  2017-05-23       Impact factor: 2.583

6.  Delayed protein synthesis reduces the correlation between mRNA and protein fluctuations.

Authors:  Tomáš Gedeon; Pavol Bokes
Journal:  Biophys J       Date:  2012-08-08       Impact factor: 4.033

7.  Geometry-induced bursting dynamics in gene expression.

Authors:  B Meyer; O Bénichou; Y Kafri; R Voituriez
Journal:  Biophys J       Date:  2012-05-02       Impact factor: 4.033

8.  An effective method for computing the noise in biochemical networks.

Authors:  Jiajun Zhang; Qing Nie; Miao He; Tianshou Zhou
Journal:  J Chem Phys       Date:  2013-02-28       Impact factor: 3.488

9.  Quantifying gene expression variability arising from randomness in cell division times.

Authors:  Duarte Antunes; Abhyudai Singh
Journal:  J Math Biol       Date:  2014-09-03       Impact factor: 2.259

10.  Promoter-mediated transcriptional dynamics.

Authors:  Jiajun Zhang; Tianshou Zhou
Journal:  Biophys J       Date:  2014-01-21       Impact factor: 4.033

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