Literature DB >> 21405157

The polarizable embedding coupled cluster method.

Kristian Sneskov1, Tobias Schwabe, Jacob Kongsted, Ove Christiansen.   

Abstract

We formulate a new combined quantum mechanics/molecular mechanics (QM/MM) method based on a self-consistent polarizable embedding (PE) scheme. For the description of the QM region, we apply the popular coupled cluster (CC) method detailing the inclusion of electrostatic and polarization effects into the CC Lagrangian. Also, we consider the transformations required to obtain molecular properties from the linear and quadratic response functions and provide an implementation for the calculation of excitation energies, one- and two-photon absorption properties, polarizabilities and hyperpolarizabilities all coupled to a polarizable MM environment. In the process, we identify CC densitylike intermediates that allow for a very efficient implementation retaining a computational low cost of the QM/MM terms even when the number of MM sites increases. The strengths of the new implementation are illustrated by property calculations on different systems representing the frontier of the capabilities of the CC/MM method. We combine our method with a molecular dynamics sampling scheme such that statistical averages of different excited state solvated properties may be obtained. Especially, we systematically investigate the relative importance of multipoles and polarizabilities in the description of two-photon absorption activity for formamide in aqueous solution. Also, we demonstrate the strengths of the CC hierarchies by incorporating correlation effects both at the CC2, CCSD, and at the triples level in the so-called PE-CCSDR(3) model. Finally, we utilize the presented method in the description of a full protein by investigating the shift of the intense electronic excitation energy of the photoactive yellow protein due to the surrounding amino acids.

Entities:  

Year:  2011        PMID: 21405157     DOI: 10.1063/1.3560034

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  6 in total

1.  Correlated natural transition orbital framework for low-scaling excitation energy calculations (CorNFLEx).

Authors:  Pablo Baudin; Kasper Kristensen
Journal:  J Chem Phys       Date:  2017-06-07       Impact factor: 3.488

2.  First-principle protocol for calculating ionization energies and redox potentials of solvated molecules and ions: theory and application to aqueous phenol and phenolate.

Authors:  Debashree Ghosh; Anirban Roy; Robert Seidel; Bernd Winter; Stephen Bradforth; Anna I Krylov
Journal:  J Phys Chem B       Date:  2012-05-04       Impact factor: 2.991

3.  Quantifying electron transfer reactions in biological systems: what interactions play the major role?

Authors:  Emil Sjulstok; Jógvan Magnus Haugaard Olsen; Ilia A Solov'yov
Journal:  Sci Rep       Date:  2015-12-22       Impact factor: 4.379

4.  Vertical Electronic Excitations in Solution with the EOM-CCSD Method Combined with a Polarizable Explicit/Implicit Solvent Model.

Authors:  Marco Caricato; Filippo Lipparini; Giovanni Scalmani; Chiara Cappelli; Vincenzo Barone
Journal:  J Chem Theory Comput       Date:  2013-07-09       Impact factor: 6.006

5.  The Dalton quantum chemistry program system.

Authors:  Kestutis Aidas; Celestino Angeli; Keld L Bak; Vebjørn Bakken; Radovan Bast; Linus Boman; Ove Christiansen; Renzo Cimiraglia; Sonia Coriani; Pål Dahle; Erik K Dalskov; Ulf Ekström; Thomas Enevoldsen; Janus J Eriksen; Patrick Ettenhuber; Berta Fernández; Lara Ferrighi; Heike Fliegl; Luca Frediani; Kasper Hald; Asger Halkier; Christof Hättig; Hanne Heiberg; Trygve Helgaker; Alf Christian Hennum; Hinne Hettema; Eirik Hjertenæs; Stinne Høst; Ida-Marie Høyvik; Maria Francesca Iozzi; Branislav Jansík; Hans Jørgen Aa Jensen; Dan Jonsson; Poul Jørgensen; Joanna Kauczor; Sheela Kirpekar; Thomas Kjærgaard; Wim Klopper; Stefan Knecht; Rika Kobayashi; Henrik Koch; Jacob Kongsted; Andreas Krapp; Kasper Kristensen; Andrea Ligabue; Ola B Lutnæs; Juan I Melo; Kurt V Mikkelsen; Rolf H Myhre; Christian Neiss; Christian B Nielsen; Patrick Norman; Jeppe Olsen; Jógvan Magnus H Olsen; Anders Osted; Martin J Packer; Filip Pawlowski; Thomas B Pedersen; Patricio F Provasi; Simen Reine; Zilvinas Rinkevicius; Torgeir A Ruden; Kenneth Ruud; Vladimir V Rybkin; Pawel Sałek; Claire C M Samson; Alfredo Sánchez de Merás; Trond Saue; Stephan P A Sauer; Bernd Schimmelpfennig; Kristian Sneskov; Arnfinn H Steindal; Kristian O Sylvester-Hvid; Peter R Taylor; Andrew M Teale; Erik I Tellgren; David P Tew; Andreas J Thorvaldsen; Lea Thøgersen; Olav Vahtras; Mark A Watson; David J D Wilson; Marcin Ziolkowski; Hans Agren
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2014-05

6.  Efficient determination of accurate atomic polarizabilities for polarizeable embedding calculations.

Authors:  Heiner Schröder; Tobias Schwabe
Journal:  J Comput Chem       Date:  2016-06-18       Impact factor: 3.376

  6 in total

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