Literature DB >> 21403637

Detection of signaling effector-complexes downstream of bmp4 using PLA, a proximity ligation assay.

Efstathia Thymiakou1, Vasso Episkopou.   

Abstract

BMPs are responsible for a wide range of developmental and biological effects. BMP receptors activate (phosphorylate) the Smad1/5/8 effectors, which then, form a complex with Smad4 and translocate to the nucleus where they function as transcription factors to initiate BMP specific downstream effects (1). Traditional immuno-fluorescence techniques with antibodies against phospho-Smad peptides exhibit low sensitivity, high background and offer gross quantification as they rely on intensity of the antibody signal particularly if this is photosensitive fluorescent. In addition, phospho-Smads may not all be in complex with Smad4 and engaged in active transcription. In situ PLA is a technology capable of detecting protein interactions with high specificity and sensitivity (2-4). This new technology couples antibody recognition with the amplification of DNA surrogate of the protein. It generates a localized, discrete signal in a form of spots revealing the exact position of the recognition event. The number of signals can be counted and compared providing a measurement. We applied in situ PLA, using the Duolink kit, with a combination of antibodies that allows the detection of the BMP signaling effectors phospho-Smad1/5/8 and Smad4 only when these are in proximity i.e. in a complex, which occurs only with signaling activation. This allowed for the first time, the visualization and measurement of endogenous BMP signaling with high specificity and sensitivity in a time course experiment under BMP4 stimulation.

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Year:  2011        PMID: 21403637      PMCID: PMC3197320          DOI: 10.3791/2631

Source DB:  PubMed          Journal:  J Vis Exp        ISSN: 1940-087X            Impact factor:   1.355


  8 in total

Review 1.  Proximity ligation assays for sensitive and specific protein analyses.

Authors:  Sigrun M Gustafsdottir; Edith Schallmeiner; Simon Fredriksson; Mats Gullberg; Ola Söderberg; Malin Jarvius; Jonas Jarvius; Mathias Howell; Ulf Landegren
Journal:  Anal Biochem       Date:  2005-02-07       Impact factor: 3.365

2.  Characterizing proteins and their interactions in cells and tissues using the in situ proximity ligation assay.

Authors:  Ola Söderberg; Karl-Johan Leuchowius; Mats Gullberg; Malin Jarvius; Irene Weibrecht; Lars-Gunnar Larsson; Ulf Landegren
Journal:  Methods       Date:  2008-07-11       Impact factor: 3.608

Review 3.  Bone morphogenetic protein receptors and signal transduction.

Authors:  Kohei Miyazono; Yuto Kamiya; Masato Morikawa
Journal:  J Biochem       Date:  2009-09-17       Impact factor: 3.387

4.  In situ proximity ligation detection of c-Jun/AP-1 dimers reveals increased levels of c-Jun/Fra1 complexes in aggressive breast cancer cell lines in vitro and in vivo.

Authors:  Bart Baan; Evangelia Pardali; Peter ten Dijke; Hans van Dam
Journal:  Mol Cell Proteomics       Date:  2010-05-28       Impact factor: 5.911

5.  Direct observation of individual endogenous protein complexes in situ by proximity ligation.

Authors:  Ola Söderberg; Mats Gullberg; Malin Jarvius; Karin Ridderstråle; Karl-Johan Leuchowius; Jonas Jarvius; Kenneth Wester; Per Hydbring; Fuad Bahram; Lars-Gunnar Larsson; Ulf Landegren
Journal:  Nat Methods       Date:  2006-10-29       Impact factor: 28.547

6.  Dorsomorphin inhibits BMP signals required for embryogenesis and iron metabolism.

Authors:  Paul B Yu; Charles C Hong; Chetana Sachidanandan; Jodie L Babitt; Donna Y Deng; Stefan A Hoyng; Herbert Y Lin; Kenneth D Bloch; Randall T Peterson
Journal:  Nat Chem Biol       Date:  2007-11-18       Impact factor: 15.040

7.  Functional interaction of DYX1C1 with estrogen receptors suggests involvement of hormonal pathways in dyslexia.

Authors:  Satu Massinen; Kristiina Tammimies; Isabel Tapia-Páez; Hans Matsson; Marie-Estelle Hokkanen; Ola Söderberg; Ulf Landegren; Eero Castrén; Jan-Ake Gustafsson; Eckardt Treuter; Juha Kere
Journal:  Hum Mol Genet       Date:  2009-05-07       Impact factor: 6.150

8.  Physical and functional interactions between liver X receptor/retinoid X receptor and Sp1 modulate the transcriptional induction of the human ATP binding cassette transporter A1 gene by oxysterols and retinoids.

Authors:  Efstathia Thymiakou; Vassilis I Zannis; Dimitris Kardassis
Journal:  Biochemistry       Date:  2007-09-22       Impact factor: 3.162

  8 in total
  23 in total

1.  Detection of in situ protein-protein complexes at the Drosophila larval neuromuscular junction using proximity ligation assay.

Authors:  Simon Wang; SooHyun Yoo; Hae-Yoon Kim; Mannan Wang; Clare Zheng; Wade Parkhouse; Charles Krieger; Nicholas Harden
Journal:  J Vis Exp       Date:  2015-01-20       Impact factor: 1.355

2.  Menin and PRMT5 suppress GLP1 receptor transcript and PKA-mediated phosphorylation of FOXO1 and CREB.

Authors:  Abdul Bari Muhammad; Bowen Xing; Chengyang Liu; Ali Naji; Xiaosong Ma; Rebecca A Simmons; Xianxin Hua
Journal:  Am J Physiol Endocrinol Metab       Date:  2017-03-07       Impact factor: 4.310

3.  In Situ Detection of Ribonucleoprotein Complex Assembly in the C. elegans Germline using Proximity Ligation Assay.

Authors:  Nicholas J Day; Xiaobo Wang; Ekaterina Voronina
Journal:  J Vis Exp       Date:  2020-05-05       Impact factor: 1.355

4.  Regulation of very-long acyl chain ceramide synthesis by acyl-CoA-binding protein.

Authors:  Natalia Santos Ferreira; Hanne Engelsby; Ditte Neess; Samuel L Kelly; Giora Volpert; Alfred H Merrill; Anthony H Futerman; Nils J Færgeman
Journal:  J Biol Chem       Date:  2017-03-19       Impact factor: 5.157

5.  SLP-2 interacts with Parkin in mitochondria and prevents mitochondrial dysfunction in Parkin-deficient human iPSC-derived neurons and Drosophila.

Authors:  Alessandra Zanon; Sreehari Kalvakuri; Aleksandar Rakovic; Luisa Foco; Marianna Guida; Christine Schwienbacher; Alice Serafin; Franziska Rudolph; Michaela Trilck; Anne Grünewald; Nancy Stanslowsky; Florian Wegner; Valentina Giorgio; Alexandros A Lavdas; Rolf Bodmer; Peter P Pramstaller; Christine Klein; Andrew A Hicks; Irene Pichler; Philip Seibler
Journal:  Hum Mol Genet       Date:  2017-07-01       Impact factor: 6.150

6.  Inhibitory phosphorylation of GSK-3β by AKT, PKA, and PI3K contributes to high NaCl-induced activation of the transcription factor NFAT5 (TonEBP/OREBP).

Authors:  Xiaoming Zhou; Hong Wang; Maurice B Burg; Joan D Ferraris
Journal:  Am J Physiol Renal Physiol       Date:  2013-01-16

7.  ASCT2 (SLC1A5) is an EGFR-associated protein that can be co-targeted by cetuximab to sensitize cancer cells to ROS-induced apoptosis.

Authors:  Haiquan Lu; Xinqun Li; Yang Lu; Songbo Qiu; Zhen Fan
Journal:  Cancer Lett       Date:  2016-07-19       Impact factor: 8.679

8.  High NaCl-induced inhibition of PTG contributes to activation of NFAT5 through attenuation of the negative effect of SHP-1.

Authors:  Xiaoming Zhou; Hong Wang; Maurice B Burg; Joan D Ferraris
Journal:  Am J Physiol Renal Physiol       Date:  2013-05-29

9.  BMPR2 acts as a gatekeeper to protect endothelial cells from increased TGFβ responses and altered cell mechanics.

Authors:  Christian Hiepen; Jerome Jatzlau; Susanne Hildebrandt; Branka Kampfrath; Melis Goktas; Arunima Murgai; Jose Luis Cuellar Camacho; Rainer Haag; Clemens Ruppert; Gerhard Sengle; Elisabetta Ada Cavalcanti-Adam; Kerstin G Blank; Petra Knaus
Journal:  PLoS Biol       Date:  2019-12-11       Impact factor: 8.029

10.  Trastuzumab-induced recruitment of Csk-homologous kinase (CHK) to ErbB2 receptor is associated with ErbB2-Y1248 phosphorylation and ErbB2 degradation to mediate cell growth inhibition.

Authors:  Milos Dokmanovic; Yun Wu; Yi Shen; Jieqing Chen; Dianne S Hirsch; Wen Jin Wu
Journal:  Cancer Biol Ther       Date:  2014-05-16       Impact factor: 4.742

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