Literature DB >> 21402208

Genetic methods for methanosarcina species.

Nicole Buan1, Gargi Kulkarni, William Metcalf.   

Abstract

Unlike most methanogenic microorganisms, Methanosarcina species are capable of utilizing a variety of growth substrates, a trait that greatly simplifies genetic analysis of the methanogenic process. The genetic tools and techniques discussed in this chapter form the basis for all genetic experiments in Methanosarcina acetivorans C2A and Methanosarcina barkeri Fusaro, two methanogens that are routinely used as model organisms for genetic experiments. Based on a number of reports, it is likely that they are portable to other Methanosarcina species, and perhaps to other methanogens as well. Here, we outline the procedures for high-efficiency transformation using liposomes, gene expression from a plasmid, and exploitation of homologous and site-specific recombination to add and delete genes from the chromosome. Finally, we outline the method for testing whether a gene is essential. These methods can be adapted and combined in any number of ways to design genetic experiments in Methanosarcina.
Copyright © 2011 Elsevier Inc. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21402208     DOI: 10.1016/B978-0-12-385112-3.00002-0

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  15 in total

1.  pNEB193-derived suicide plasmids for gene deletion and protein expression in the methane-producing archaeon, Methanosarcina acetivorans.

Authors:  Mitchell T Shea; Mary E Walter; Nikolas Duszenko; Anne-Lise Ducluzeau; Jared Aldridge; Shannon K King; Nicole R Buan
Journal:  Plasmid       Date:  2016-02-11       Impact factor: 3.466

2.  Genetic, Genomic, and Transcriptomic Studies of Pyruvate Metabolism in Methanosarcina barkeri Fusaro.

Authors:  Madeline M López Muñoz; Peter Schönheit; William W Metcalf
Journal:  J Bacteriol       Date:  2015-09-08       Impact factor: 3.490

3.  Efficient Sulfide Assimilation in Methanosarcina acetivorans Is Mediated by the MA1715 Protein.

Authors:  Benjamin Julius Rauch; John J Perona
Journal:  J Bacteriol       Date:  2016-06-27       Impact factor: 3.490

4.  Rerouting Cellular Electron Flux To Increase the Rate of Biological Methane Production.

Authors:  Jennie L Catlett; Alicia M Ortiz; Nicole R Buan
Journal:  Appl Environ Microbiol       Date:  2015-07-10       Impact factor: 4.792

5.  Development of β -lactamase as a tool for monitoring conditional gene expression by a tetracycline-riboswitch in Methanosarcina acetivorans.

Authors:  Shemsi Demolli; Miriam M Geist; Julia E Weigand; Nicole Matschiavelli; Beatrix Suess; Michael Rother
Journal:  Archaea       Date:  2014-01-20       Impact factor: 3.273

6.  Energy Conservation via Hydrogen Cycling in the Methanogenic Archaeon Methanosarcina barkeri.

Authors:  Gargi Kulkarni; Thomas D Mand; William W Metcalf
Journal:  mBio       Date:  2018-07-03       Impact factor: 7.867

7.  A Membrane-Bound Cytochrome Enables Methanosarcina acetivorans To Conserve Energy from Extracellular Electron Transfer.

Authors:  Dawn E Holmes; Toshiyuki Ueki; Hai-Yan Tang; Jinjie Zhou; Jessica A Smith; Gina Chaput; Derek R Lovley
Journal:  mBio       Date:  2019-08-20       Impact factor: 7.867

8.  A Genetic System for Methanocaldococcus jannaschii: An Evolutionary Deeply Rooted Hyperthermophilic Methanarchaeon.

Authors:  Dwi Susanti; Mary C Frazier; Biswarup Mukhopadhyay
Journal:  Front Microbiol       Date:  2019-07-03       Impact factor: 5.640

9.  Genetic manipulation of Methanosarcina spp.

Authors:  Petra R A Kohler; William W Metcalf
Journal:  Front Microbiol       Date:  2012-07-24       Impact factor: 5.640

10.  Overview of the genetic tools in the Archaea.

Authors:  Haruyuki Atomi; Tadayuki Imanaka; Toshiaki Fukui
Journal:  Front Microbiol       Date:  2012-10-02       Impact factor: 5.640

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.