Literature DB >> 21399633

Genome-wide association study identifies susceptibility loci for IgA nephropathy.

Ali G Gharavi1, Krzysztof Kiryluk, Murim Choi, Yifu Li, Ping Hou, Jingyuan Xie, Simone Sanna-Cherchi, Clara J Men, Bruce A Julian, Robert J Wyatt, Jan Novak, John C He, Haiyan Wang, Jicheng Lv, Li Zhu, Weiming Wang, Zhaohui Wang, Kasuhito Yasuno, Murat Gunel, Shrikant Mane, Sheila Umlauf, Irina Tikhonova, Isabel Beerman, Silvana Savoldi, Riccardo Magistroni, Gian Marco Ghiggeri, Monica Bodria, Francesca Lugani, Pietro Ravani, Claudio Ponticelli, Landino Allegri, Giuliano Boscutti, Giovanni Frasca, Alessandro Amore, Licia Peruzzi, Rosanna Coppo, Claudia Izzi, Battista Fabio Viola, Elisabetta Prati, Maurizio Salvadori, Renzo Mignani, Loreto Gesualdo, Francesca Bertinetto, Paola Mesiano, Antonio Amoroso, Francesco Scolari, Nan Chen, Hong Zhang, Richard P Lifton.   

Abstract

We carried out a genome-wide association study of IgA nephropathy, a major cause of kidney failure worldwide. We studied 1,194 cases and 902 controls of Chinese Han ancestry, with targeted follow up in Chinese and European cohorts comprising 1,950 cases and 1,920 controls. We identified three independent loci in the major histocompatibility complex, as well as a common deletion of CFHR1 and CFHR3 at chromosome 1q32 and a locus at chromosome 22q12 that each surpassed genome-wide significance (P values for association between 1.59 × 10⁻²⁶ and 4.84 × 10⁻⁹ and minor allele odds ratios of 0.63-0.80). These five loci explain 4-7% of the disease variance and up to a tenfold variation in interindividual risk. Many of the alleles that protect against IgA nephropathy impart increased risk for other autoimmune or infectious diseases, and IgA nephropathy risk allele frequencies closely parallel the variation in disease prevalence among Asian, European and African populations, suggesting complex selective pressures.

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Year:  2011        PMID: 21399633      PMCID: PMC3412515          DOI: 10.1038/ng.787

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  50 in total

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  254 in total

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4.  Association of ITGAX and ITGAM gene polymorphisms with susceptibility to IgA nephropathy.

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