Literature DB >> 21399621

Structure and function of a HECT domain ubiquitin-binding site.

Hyung Cheol Kim1, Alanna M Steffen, Michael L Oldham, Jue Chen, Jon M Huibregtse.   

Abstract

The Rsp5 ubiquitin ligase contains a non-covalent binding site for ubiquitin within the amino-terminal lobe (N-lobe) of the HECT domain, and the X-ray crystal structure of the HECT-ubiquitin complex has been determined. Hydrophobic patch residues of ubiquitin (L8, I44, V70) were crucial for interaction with Rsp5, and amino-acid alterations at the Rsp5-binding interface resulted in defects in polyubiquitination. Our results support a model in which the N-lobe-binding site acts to localize and orient the distal end of the ubiquitin chain to promote conjugation of the next ubiquitin molecule.

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Year:  2011        PMID: 21399621      PMCID: PMC3077248          DOI: 10.1038/embor.2011.23

Source DB:  PubMed          Journal:  EMBO Rep        ISSN: 1469-221X            Impact factor:   8.807


  18 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2006-05-11       Impact factor: 11.205

3.  Polyubiquitination by HECT E3s and the determinants of chain type specificity.

Authors:  Hyung Cheol Kim; Jon M Huibregtse
Journal:  Mol Cell Biol       Date:  2009-04-13       Impact factor: 4.272

4.  Crystallography & NMR system: A new software suite for macromolecular structure determination.

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Authors:  M Scheffner; U Nuber; J M Huibregtse
Journal:  Nature       Date:  1995-01-05       Impact factor: 49.962

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Journal:  Science       Date:  1999-11-12       Impact factor: 47.728

7.  A robust bulk-solvent correction and anisotropic scaling procedure.

Authors:  Pavel V Afonine; Ralf W Grosse-Kunstleve; Paul D Adams
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-06-24

8.  Regulation of the RSP5 ubiquitin ligase by an intrinsic ubiquitin-binding site.

Authors:  Michael E French; Benjamin R Kretzmann; Linda Hicke
Journal:  J Biol Chem       Date:  2009-02-27       Impact factor: 5.157

9.  Structure of the HECT:ubiquitin complex and its role in ubiquitin chain elongation.

Authors:  Elena Maspero; Sara Mari; Eleonora Valentini; Andrea Musacchio; Alexander Fish; Sebastiano Pasqualato; Simona Polo
Journal:  EMBO Rep       Date:  2011-03-11       Impact factor: 8.807

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  62 in total

1.  Covalent Tethering of Fragments For Covalent Probe Discovery.

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2.  A conformational switch regulates the ubiquitin ligase HUWE1.

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3.  The ubiquitin-associated domain of cellular inhibitor of apoptosis proteins facilitates ubiquitylation.

Authors:  Rhesa Budhidarmo; Catherine L Day
Journal:  J Biol Chem       Date:  2014-07-26       Impact factor: 5.157

4.  A Tunable Brake for HECT Ubiquitin Ligases.

Authors:  Zan Chen; Hanjie Jiang; Wei Xu; Xiaoguang Li; Daniel R Dempsey; Xiangbin Zhang; Peter Devreotes; Cynthia Wolberger; L Mario Amzel; Sandra B Gabelli; Philip A Cole
Journal:  Mol Cell       Date:  2017-05-04       Impact factor: 17.970

5.  E6AP/UBE3A ubiquitin ligase harbors two E2~ubiquitin binding sites.

Authors:  Virginia P Ronchi; Jennifer M Klein; Arthur L Haas
Journal:  J Biol Chem       Date:  2013-02-25       Impact factor: 5.157

6.  Structural and functional characterization of a ubiquitin variant engineered for tight and specific binding to an alpha-helical ubiquitin interacting motif.

Authors:  Noah Manczyk; Bradley P Yates; Gianluca Veggiani; Andreas Ernst; Frank Sicheri; Sachdev S Sidhu
Journal:  Protein Sci       Date:  2017-03-24       Impact factor: 6.725

7.  Mechanism of ubiquitin chain synthesis employed by a HECT domain ubiquitin ligase.

Authors:  Michael E French; Julian L Klosowiak; Aaron Aslanian; Steven I Reed; John R Yates; Tony Hunter
Journal:  J Biol Chem       Date:  2017-05-01       Impact factor: 5.157

8.  RING-between-RINGs--keeping the safety on loaded guns.

Authors:  Katja K Dove; Rachel E Klevit
Journal:  EMBO J       Date:  2012-09-07       Impact factor: 11.598

Review 9.  Structural and functional insights to ubiquitin-like protein conjugation.

Authors:  Frederick C Streich; Christopher D Lima
Journal:  Annu Rev Biophys       Date:  2014       Impact factor: 12.981

10.  Effect of surfactant hydrophobicity on the pathway for unfolding of ubiquitin.

Authors:  Bryan F Shaw; Grégory F Schneider; George M Whitesides
Journal:  J Am Chem Soc       Date:  2012-10-31       Impact factor: 15.419

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