Literature DB >> 21398537

Genome sequence of Victivallis vadensis ATCC BAA-548, an anaerobic bacterium from the phylum Lentisphaerae, isolated from the human gastrointestinal tract.

Mark W J van Passel1, Ravi Kant, Airi Palva, Susan Lucas, Alex Copeland, Alla Lapidus, Tijana Glavina del Rio, Eileen Dalin, Hope Tice, David Bruce, Lynne Goodwin, Sam Pitluck, Karen Walston Davenport, David Sims, Thomas S Brettin, John C Detter, Shunsheng Han, Frank W Larimer, Miriam L Land, Loren Hauser, Nikolaos Kyrpides, Galina Ovchinnikova, P Paul Richardson, Willem M de Vos, Hauke Smidt, Erwin G Zoetendal.   

Abstract

Victivallis vadensis ATCC BAA-548 represents the first cultured representative from the novel phylum Lentisphaerae, a deep-branching bacterial lineage. Few cultured bacteria from this phylum are known, and V. vadensis therefore represents an important organism for evolutionary studies. V. vadensis is a strictly anaerobic sugar-fermenting isolate from the human gastrointestinal tract.

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Year:  2011        PMID： 21398537      PMCID： PMC3133096          DOI： 10.1128/JB.00271-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  13 in total

1.  Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.

Authors:  A Krogh; B Larsson; G von Heijne; E L Sonnhammer
Journal:  J Mol Biol       Date:  2001-01-19       Impact factor: 5.469

2.  Rfam: an RNA family database.

Authors:  Sam Griffiths-Jones; Alex Bateman; Mhairi Marshall; Ajay Khanna; Sean R Eddy
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

3.  Lentisphaera araneosa gen. nov., sp. nov, a transparent exopolymer producing marine bacterium, and the description of a novel bacterial phylum, Lentisphaerae.

Authors:  Jang-Cheon Cho; Kevin L Vergin; Robert M Morris; Stephen J Giovannoni
Journal:  Environ Microbiol       Date:  2004-06       Impact factor: 5.491

4.  GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes.

Authors:  Amrita Pati; Natalia N Ivanova; Natalia Mikhailova; Galina Ovchinnikova; Sean D Hooper; Athanasios Lykidis; Nikos C Kyrpides
Journal:  Nat Methods       Date:  2010-05-02       Impact factor: 28.547

Review 5.  High-throughput diversity and functionality analysis of the gastrointestinal tract microbiota.

Authors:  E G Zoetendal; M Rajilic-Stojanovic; W M de Vos
Journal:  Gut       Date:  2008-11       Impact factor: 23.059

6.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

7.  Genome sequence of Lentisphaera araneosa HTCC2155T, the type species of the order Lentisphaerales in the phylum Lentisphaerae.

Authors:  J Cameron Thrash; Jang-Cheon Cho; Kevin L Vergin; Robert M Morris; Stephen J Giovannoni
Journal:  J Bacteriol       Date:  2010-04-02       Impact factor: 3.490

8.  Victivallis vadensis gen. nov., sp. nov., a sugar-fermenting anaerobe from human faeces.

Authors:  Erwin G Zoetendal; Caroline M Plugge; Antoon D L Akkermans; Willem M de Vos
Journal:  Int J Syst Evol Microbiol       Date:  2003-01       Impact factor: 2.747

9.  The genome of Akkermansia muciniphila, a dedicated intestinal mucin degrader, and its use in exploring intestinal metagenomes.

Authors:  Mark W J van Passel; Ravi Kant; Erwin G Zoetendal; Caroline M Plugge; Muriel Derrien; Stephanie A Malfatti; Patrick S G Chain; Tanja Woyke; Airi Palva; Willem M de Vos; Hauke Smidt
Journal:  PLoS One       Date:  2011-03-03       Impact factor: 3.240

10.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971
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  4 in total

Review 1.  The first 1000 cultured species of the human gastrointestinal microbiota.

Authors:  Mirjana Rajilić-Stojanović; Willem M de Vos
Journal:  FEMS Microbiol Rev       Date:  2014-06-27       Impact factor: 16.408

2.  Identification and characterization of a novel β-galactosidase from Victivallis vadensis ATCC BAA-548, an anaerobic fecal bacterium.

Authors:  Uyangaa Temuujin; Won-Jae Chi; Jae-Sun Park; Yong-Keun Chang; Jae Yang Song; Soon-Kwang Hong
Journal:  J Microbiol       Date:  2012-12-30       Impact factor: 3.422

3.  Molecular Signatures for the PVC Clade (Planctomycetes, Verrucomicrobia, Chlamydiae, and Lentisphaerae) of Bacteria Provide Insights into Their Evolutionary Relationships.

Authors:  Radhey S Gupta; Vaibhav Bhandari; Hafiz Sohail Naushad
Journal:  Front Microbiol       Date:  2012-09-17       Impact factor: 5.640

4.  Four Lentisphaerae Family Metagenome-Assembled Genomes from the South Atlantic Ocean.

Authors:  Oluwatayo A Makinde; Percy Mutseka Lunga; Oliver K I Bezuidt; Thulani P Makhalanyane
Journal:  Microbiol Resour Announc       Date:  2022-08-08
  4 in total

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