Literature DB >> 21394233

Evolutionary and Ecological Genomics of Non-Model Plants.

Bao-Hua Song1, Thomas Mitchell-Olds.   

Abstract

Dissecting evolutionary dynamics of ecologically important traits is a long-term challenge for biologists. Attempts to understand natural variation and molecular mechanisms have motivated a move from laboratory model systems to non-model systems in diverse natural environments. Next generation sequencing methods, along with an expansion of genomic resources and tools, have fostered new links between diverse disciplines, including molecular biology, evolution, and ecology, and genomics. Great progress has been made in a few non-model wild plants, such as Arabidopsis relatives, monkey flowers, and wild sunflowers. Until recently, the lack of comprehensive genomic information has limited evolutionary and ecological studies to larger QTL regions rather than single gene resolution, and has hindered recognition of general patterns of natural variation and local adaptation. Further efforts in accumulating genomic data and developing bioinformatic and biostatistical tools are now poised to move this field forward. Integrative national and international collaborations and research communities are needed to facilitate development in the field of evolutionary and ecological genomics.

Entities:  

Year:  2011        PMID: 21394233      PMCID: PMC3050529          DOI: 10.1111/j.1759-6831.2010.00111.x

Source DB:  PubMed          Journal:  J Syst Evol        ISSN: 1759-6831            Impact factor:   4.098


  59 in total

1.  Mimicry on the QT(L): genetics of speciation in Mimulus.

Authors:  R Bleiweiss
Journal:  Evolution       Date:  2001-08       Impact factor: 3.694

Review 2.  Combining population genomics and quantitative genetics: finding the genes underlying ecologically important traits.

Authors:  J R Stinchcombe; H E Hoekstra
Journal:  Heredity (Edinb)       Date:  2007-02-21       Impact factor: 3.821

Review 3.  Genetics and phylogenetics of rice domestication.

Authors:  Tao Sang; Song Ge
Journal:  Curr Opin Genet Dev       Date:  2007-11-07       Impact factor: 5.578

4.  Adaptation at specific loci. I. Natural selection on phosphoglucose isomerase of Colias butterflies: Biochemical and population aspects.

Authors:  W B Watt
Journal:  Genetics       Date:  1977-09       Impact factor: 4.562

Review 5.  The molecular genetics of crop domestication.

Authors:  John F Doebley; Brandon S Gaut; Bruce D Smith
Journal:  Cell       Date:  2006-12-29       Impact factor: 41.582

6.  Contrasting evolutionary forces in the Arabidopsis thaliana floral developmental pathway.

Authors:  Kenneth M Olsen; Andrew Womack; Ashley R Garrett; Jane I Suddith; Michael D Purugganan
Journal:  Genetics       Date:  2002-04       Impact factor: 4.562

7.  Genetic architecture for the adaptive origin of annual wild rice, oryza nivara.

Authors:  Michael A Grillo; Changbao Li; Angela M Fowlkes; Trevor M Briggeman; Ailing Zhou; Douglas W Schemske; Tao Sang
Journal:  Evolution       Date:  2009-01-06       Impact factor: 3.694

8.  Genetic analysis of rice domestication syndrome with the wild annual species, Oryza nivara.

Authors:  Changbao Li; Ailing Zhou; Tao Sang
Journal:  New Phytol       Date:  2006       Impact factor: 10.151

9.  Strong correlation of wild barley (Hordeum spontaneum) population structure with temperature and precipitation variation.

Authors:  S Hübner; M Höffken; E Oren; G Haseneyer; N Stein; A Graner; K Schmid; E Fridman
Journal:  Mol Ecol       Date:  2009-04       Impact factor: 6.185

10.  Fitness effects associated with the major flowering time gene FRIGIDA in Arabidopsis thaliana in the field.

Authors:  Tonia M Korves; Karl J Schmid; Ana L Caicedo; Charlotte Mays; John R Stinchcombe; Michael D Purugganan; Johanna Schmitt
Journal:  Am Nat       Date:  2007-03-07       Impact factor: 3.926

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  3 in total

1.  Sequence evolution and expression regulation of stress-responsive genes in natural populations of wild tomato.

Authors:  Iris Fischer; Kim A Steige; Wolfgang Stephan; Mamadou Mboup
Journal:  PLoS One       Date:  2013-10-18       Impact factor: 3.240

2.  Environmental versus geographical effects on genomic variation in wild soybean (Glycine soja) across its native range in northeast Asia.

Authors:  Larry J Leamy; Cheng-Ruei Lee; Qijian Song; Ibro Mujacic; Yan Luo; Charles Y Chen; Changbao Li; Susanne Kjemtrup; Bao-Hua Song
Journal:  Ecol Evol       Date:  2016-08-14       Impact factor: 2.912

3.  Abiotic and biotic controls on local spatial distribution and performance of Boechera stricta.

Authors:  Kusum J Naithani; Brent E Ewers; Jonathan D Adelman; David H Siemens
Journal:  Front Plant Sci       Date:  2014-07-22       Impact factor: 5.753

  3 in total

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