Literature DB >> 21393851

Crystallization and crystallographic analysis of the Rhodococcus rhodochrous NCIMB 13064 DhaA mutant DhaA31 and its complex with 1,2,3-trichloropropane.

Maryna Lahoda1, Radka Chaloupkova, Alena Stsiapanava, Jiri Damborsky, Ivana Kuta Smatanova.   

Abstract

Haloalkane dehalogenases hydrolyze carbon-halogen bonds in a wide range of halogenated aliphatic compounds. The potential use of haloalkane dehalogenases in bioremediation applications has stimulated intensive investigation of these enzymes and their engineering. The mutant DhaA31 was constructed to degrade the anthropogenic compound 1,2,3-trichloropropane (TCP) using a new strategy. This strategy enhances activity towards TCP by decreasing the accessibility of the active site to water molecules, thereby promoting formation of the activated complex. The structure of DhaA31 will help in understanding the structure-function relationships involved in the improved dehalogenation of TCP. The mutant protein DhaA31 was crystallized by the sitting-drop vapour-diffusion technique and crystals of DhaA31 in complex with TCP were obtained using soaking experiments. Both crystals belonged to the triclinic space group P1. Diffraction data were collected to high resolution: to 1.31 Å for DhaA31 and to 1.26 Å for DhaA31 complexed with TCP.

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Year:  2011        PMID: 21393851      PMCID: PMC3053171          DOI: 10.1107/S1744309111001254

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  12 in total

1.  Refinement of macromolecular structures by the maximum-likelihood method.

Authors:  G N Murshudov; A A Vagin; E J Dodson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1997-05-01

2.  Redesigning dehalogenase access tunnels as a strategy for degrading an anthropogenic substrate.

Authors:  Martina Pavlova; Martin Klvana; Zbynek Prokop; Radka Chaloupkova; Pavel Banas; Michal Otyepka; Rebecca C Wade; Masataka Tsuda; Yuji Nagata; Jiri Damborsky
Journal:  Nat Chem Biol       Date:  2009-08-23       Impact factor: 15.040

3.  A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding.

Authors:  M M Bradford
Journal:  Anal Biochem       Date:  1976-05-07       Impact factor: 3.365

4.  Utilization of trihalogenated propanes by Agrobacterium radiobacter AD1 through heterologous expression of the haloalkane dehalogenase from Rhodococcus sp. strain M15-3.

Authors:  T Bosma; E Kruizinga; E J de Bruin; G J Poelarends; D B Janssen
Journal:  Appl Environ Microbiol       Date:  1999-10       Impact factor: 4.792

5.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

6.  Haloalkane dehalogenases: structure of a Rhodococcus enzyme.

Authors:  J Newman; T S Peat; R Richard; L Kan; P E Swanson; J A Affholter; I H Holmes; J F Schindler; C J Unkefer; T C Terwilliger
Journal:  Biochemistry       Date:  1999-12-07       Impact factor: 3.162

7.  Haloalkane dehalogenases: steady-state kinetics and halide inhibition.

Authors:  J F Schindler; P A Naranjo; D A Honaberger; C H Chang; J R Brainard; L A Vanderberg; C J Unkefer
Journal:  Biochemistry       Date:  1999-05-04       Impact factor: 3.162

8.  The plasmid-located haloalkane dehalogenase gene from Rhodococcus rhodochrous NCIMB 13064.

Authors:  Anna N Kulakova; Michael J Larkin; Leonid A Kulakov
Journal:  Microbiology (Reading)       Date:  1997-01       Impact factor: 2.777

9.  Atomic resolution studies of haloalkane dehalogenases DhaA04, DhaA14 and DhaA15 with engineered access tunnels.

Authors:  A Stsiapanava; J Dohnalek; J A Gavira; M Kuty; T Koudelakova; J Damborsky; I Kuta Smatanova
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-08-13

10.  Pathways and mechanisms for product release in the engineered haloalkane dehalogenases explored using classical and random acceleration molecular dynamics simulations.

Authors:  Martin Klvana; Martina Pavlova; Tana Koudelakova; Radka Chaloupkova; Pavel Dvorak; Zbynek Prokop; Alena Stsiapanava; Michal Kuty; Ivana Kuta-Smatanova; Jan Dohnalek; Petr Kulhanek; Rebecca C Wade; Jiri Damborsky
Journal:  J Mol Biol       Date:  2009-07-03       Impact factor: 5.469

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