Literature DB >> 21389551

Coarse-grain modelling of DMPC and DOPC lipid bilayers.

Mario Orsi1, Julien Michel, Jonathan W Essex.   

Abstract

Our recently developed coarse-grain model for dimyristoylphosphatidylcholine (DMPC) has been improved and extended to dioleylphosphatidylcholine (DOPC), a more typical constituent of real biological membranes. Single-component DMPC and DOPC bilayers have been simulated using microsecond-long molecular dynamics. We investigated properties that are difficult or impossible to access experimentally, such as the pressure distribution, the spontaneous curvature and the diffusion pattern of individual lipid molecules. Moreover, we studied the dipole potential, a basic physical feature of paramount biological importance that cannot be currently modelled by other coarse-grain approaches. In fact, a complete representation of the system electrostatics and a realistic description of the water component make our method unique amongst the existing coarse-grain membrane models. The spontaneous permeation of water, a phenomenon out of reach of standard atomistic models, was also observed and quantified; this was possible thanks to the efficiency of our model, which is about two orders of magnitude less computationally expensive than atomic-level counterparts. Results are generally in good agreement with the literature data. Further model extensions and future applications are proposed.

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Year:  2010        PMID: 21389551     DOI: 10.1088/0953-8984/22/15/155106

Source DB:  PubMed          Journal:  J Phys Condens Matter        ISSN: 0953-8984            Impact factor:   2.333


  14 in total

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3.  Membrane Curvature and Lipid Composition Synergize To Regulate N-Ras Anchor Recruitment.

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4.  Formation and Properties of a Self-Assembled Nanoparticle-Supported Lipid Bilayer Probed through Molecular Dynamics Simulations.

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5.  Testing physical models of passive membrane permeation.

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7.  Dual-resolution molecular dynamics simulation of antimicrobials in biomembranes.

Authors:  Mario Orsi; Massimo G Noro; Jonathan W Essex
Journal:  J R Soc Interface       Date:  2010-12-03       Impact factor: 4.118

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Authors:  Dina Mirjanian; Allison N Dickey; Jan H Hoh; Thomas B Woolf; Mark J Stevens
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9.  Molecular dynamics simulations of DPPC bilayers using "LIME", a new coarse-grained model.

Authors:  Emily M Curtis; Carol K Hall
Journal:  J Phys Chem B       Date:  2013-04-16       Impact factor: 2.991

10.  Modeling kinetics and equilibrium of membranes with fields: milestoning analysis and implication to permeation.

Authors:  Alfredo E Cardenas; Ron Elber
Journal:  J Chem Phys       Date:  2014-08-07       Impact factor: 3.488

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