Literature DB >> 21389359

Applications of the principle of maximum entropy: from physics to ecology.

Jayanth R Banavar1, Amos Maritan, Igor Volkov.   

Abstract

There are numerous situations in physics and other disciplines which can be described at different levels of detail in terms of probability distributions. Such descriptions arise either intrinsically as in quantum mechanics, or because of the vast amount of details necessary for a complete description as, for example, in Brownian motion and in many-body systems. We show that an application of the principle of maximum entropy for estimating the underlying probability distribution can depend on the variables used for describing the system. The choice of characterization of the system carries with it implicit assumptions about fundamental attributes such as whether the system is classical or quantum mechanical or equivalently whether the individuals are distinguishable or indistinguishable. We show that the correct procedure entails the maximization of the relative entropy subject to known constraints and, additionally, requires knowledge of the behavior of the system in the absence of these constraints. We present an application of the principle of maximum entropy to understanding species diversity in ecology and introduce a new statistical ensemble corresponding to the distribution of a variable population of individuals into a set of species not defined a priori.

Mesh:

Year:  2010        PMID: 21389359     DOI: 10.1088/0953-8984/22/6/063101

Source DB:  PubMed          Journal:  J Phys Condens Matter        ISSN: 0953-8984            Impact factor:   2.333


  9 in total

1.  Measurement scale in maximum entropy models of species abundance.

Authors:  S A Frank
Journal:  J Evol Biol       Date:  2011-01-25       Impact factor: 2.411

2.  A Free Energy Principle for Biological Systems.

Authors:  Friston Karl
Journal:  Entropy (Basel)       Date:  2012-11       Impact factor: 2.524

3.  Entropic Dynamics on Gibbs Statistical Manifolds.

Authors:  Pedro Pessoa; Felipe Xavier Costa; Ariel Caticha
Journal:  Entropy (Basel)       Date:  2021-04-21       Impact factor: 2.524

4.  Large-scale dynamics of horizontal transfers.

Authors:  Luigi Grassi; Jacopo Grilli; Marco Cosentino Lagomarsino
Journal:  Mob Genet Elements       Date:  2012-05-01

Review 5.  Beyond Moments: Extending the Maximum Entropy Principle to Feature Distribution Constraints.

Authors:  Paul M Baggenstoss
Journal:  Entropy (Basel)       Date:  2018-08-30       Impact factor: 2.524

6.  Remarks on the Maximum Entropy Principle with Application to the Maximum Entropy Theory of Ecology.

Authors:  Marco Favretti
Journal:  Entropy (Basel)       Date:  2017-12-27       Impact factor: 2.524

7.  Biases and Variability from Costly Bayesian Inference.

Authors:  Arthur Prat-Carrabin; Florent Meyniel; Misha Tsodyks; Rava Azeredo da Silveira
Journal:  Entropy (Basel)       Date:  2021-05-13       Impact factor: 2.524

8.  Degeneracy and Redundancy in Active Inference.

Authors:  Noor Sajid; Thomas Parr; Thomas M Hope; Cathy J Price; Karl J Friston
Journal:  Cereb Cortex       Date:  2020-10-01       Impact factor: 5.357

Review 9.  An introduction to the maximum entropy approach and its application to inference problems in biology.

Authors:  Andrea De Martino; Daniele De Martino
Journal:  Heliyon       Date:  2018-04-13
  9 in total

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