Literature DB >> 21388895

Optimal DNA tier for the IRT/DNA algorithm determined by CFTR mutation results over 14 years of newborn screening.

Mei W Baker1, Molly Groose, Gary Hoffman, Michael Rock, Hara Levy, Philip M Farrell.   

Abstract

BACKGROUND: There has been great variation and uncertainty about how many and what CFTR mutations to include in cystic fibrosis (CF) newborn screening algorithms, and very little research on this topic using large populations of newborns.
METHODS: We reviewed Wisconsin screening results for 1994-2008 to identify an ideal panel.
RESULTS: Upon analyzing approximately 1 million screening results, we found it optimal to use a 23 CFTR mutation panel as a second tier when an immunoreactive trypsinogen (IRT)/DNA algorithm was applied for CF screening. This panel in association with a 96th percentile IRT cutoff gave a sensitivity of 97.3%, but restricting the DNA tier to F508del was associated with 90% (P<.0001).
CONCLUSIONS: Although CFTR panel selection has been challenging, our data show that a 23 mutation method optimizes sensitivity and is advantageous. The IRT cutoff value, however, is actually more critical than DNA in determining CF newborn screening sensitivity.
Copyright © 2011 European Cystic Fibrosis Society. Published by Elsevier B.V. All rights reserved.

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Mesh:

Year:  2011        PMID: 21388895      PMCID: PMC3650906          DOI: 10.1016/j.jcf.2011.02.001

Source DB:  PubMed          Journal:  J Cyst Fibros        ISSN: 1569-1993            Impact factor:   5.482


  22 in total

1.  Immunoreactive trypsin/DNA newborn screening for cystic fibrosis: should the R117H variant be included in CFTR mutation panels?

Authors:  Virginie Scotet; Marie-Pierre Audrézet; Michel Roussey; Gilles Rault; Anne Dirou-Prigent; Hubert Journel; Valérie Moisan-Petit; Véronique Storni; Claude Férec
Journal:  Pediatrics       Date:  2006-10-02       Impact factor: 7.124

2.  Cystic fibrosis mutations and genotype-pulmonary phenotype analysis.

Authors:  Andrew T Braun; Philip M Farrell; Claude Ferec; Marie Pierre Audrezet; Anita Laxova; Zhanhai Li; Michael R Kosorok; Marjorie A Rosenberg; William M Gershan
Journal:  J Cyst Fibros       Date:  2005-11-04       Impact factor: 5.482

3.  Dried-blood spot screening for cystic fibrosis in the newborn.

Authors:  J R Crossley; R B Elliott; P A Smith
Journal:  Lancet       Date:  1979-03-03       Impact factor: 79.321

4.  Newborn screening for cystic fibrosis in Wisconsin: comparison of biochemical and molecular methods.

Authors:  R G Gregg; A Simantel; P M Farrell; R Koscik; M R Kosorok; A Laxova; R Laessig; G Hoffman; D Hassemer; E H Mischler; M Splaingard
Journal:  Pediatrics       Date:  1997-06       Impact factor: 7.124

5.  Newborn screening for cystic fibrosis is complicated by age-related decline in immunoreactive trypsinogen levels.

Authors:  M J Rock; E H Mischler; P M Farrell; L J Wei; W T Bruns; D J Hassemer; R H Laessig
Journal:  Pediatrics       Date:  1990-06       Impact factor: 7.124

6.  The incidence of cystic fibrosis.

Authors:  M R Kosorok; W H Wei; P M Farrell
Journal:  Stat Med       Date:  1996-03-15       Impact factor: 2.373

7.  Application of DNA analysis in a population-screening program for neonatal diagnosis of cystic fibrosis (CF): comparison of screening protocols.

Authors:  R G Gregg; B S Wilfond; P M Farrell; A Laxova; D Hassemer; E H Mischler
Journal:  Am J Hum Genet       Date:  1993-03       Impact factor: 11.025

8.  [Systematic neonatal screening for mucoviscidosis using an immunoreactive trypsin blood assay. Evaluation of 80,000 tests].

Authors:  G Travert; J F Duhamel
Journal:  Arch Fr Pediatr       Date:  1983-04

9.  Efficacy of statewide neonatal screening for cystic fibrosis by assay of trypsinogen concentrations.

Authors:  K B Hammond; S H Abman; R J Sokol; F J Accurso
Journal:  N Engl J Med       Date:  1991-09-12       Impact factor: 91.245

10.  Neonatal screening for cystic fibrosis using immunoreactive trypsinogen and direct gene analysis: four years' experience.

Authors:  E Ranieri; B D Lewis; R L Gerace; R G Ryall; C P Morris; P V Nelson; W F Carey; E F Robertson
Journal:  BMJ       Date:  1994-06-04
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  13 in total

1.  A decision-tree approach to cost comparison of newborn screening strategies for cystic fibrosis.

Authors:  Janelle Wells; Marjorie Rosenberg; Gary Hoffman; Michael Anstead; Philip M Farrell
Journal:  Pediatrics       Date:  2012-01-30       Impact factor: 7.124

2.  Hispanic Infants with cystic fibrosis show low CFTR mutation detection rates in the Illinois newborn screening program.

Authors:  Kimberly Danieli Watts; Benjamin Layne; Ann Harris; Susanna A McColley
Journal:  J Genet Couns       Date:  2012-02-04       Impact factor: 2.537

3.  Factors accounting for a missed diagnosis of cystic fibrosis after newborn screening.

Authors:  Michael J Rock; Hara Levy; Christina Zaleski; Philip M Farrell
Journal:  Pediatr Pulmonol       Date:  2011-08-24

4.  Changing incidence of cystic fibrosis in Wisconsin, USA.

Authors:  Katelyn Parker-McGill; Melodee Nugent; Rachel Bersie; Gary Hoffman; Michael Rock; Mei Baker; Philip M Farrell; Pippa Simpson; Hara Levy
Journal:  Pediatr Pulmonol       Date:  2015-08-10

5.  Effects of immediate telephone follow-up with providers on sweat chloride test timing after cystic fibrosis newborn screening identifies a single mutation.

Authors:  Alison La Pean; Michael H Farrell; Kerry L Eskra; Philip M Farrell
Journal:  J Pediatr       Date:  2012-10-24       Impact factor: 4.406

6.  Refining the continuum of CFTR-associated disorders in the era of newborn screening.

Authors:  H Levy; M Nugent; K Schneck; D Stachiw-Hietpas; A Laxova; O Lakser; M Rock; M K Dahmer; J Biller; S Z Nasr; M Baker; S A McColley; P Simpson; P M Farrell
Journal:  Clin Genet       Date:  2016-01-20       Impact factor: 4.438

7.  Prospective and parallel assessments of cystic fibrosis newborn screening protocols in the Czech Republic: IRT/DNA/IRT versus IRT/PAP and IRT/PAP/DNA.

Authors:  Veronika Krulišová; Miroslava Balaščaková; Veronika Skalická; Tereza Piskáčková; Andrea Holubová; Jana Paděrová; Petra Křenková; Lenka Dvořáková; Dana Zemková; Petr Kračmar; Blanka Chovancová; Věra Vávrová; Alexandra Stambergová; Felix Votava; Milan Macek
Journal:  Eur J Pediatr       Date:  2012-05-12       Impact factor: 3.183

8.  Improving newborn screening for cystic fibrosis using next-generation sequencing technology: a technical feasibility study.

Authors:  Mei W Baker; Anne E Atkins; Suzanne K Cordovado; Miyono Hendrix; Marie C Earley; Philip M Farrell
Journal:  Genet Med       Date:  2015-02-12       Impact factor: 8.822

9.  Carrier Screening is a Deficient Strategy for Determining Sperm Donor Eligibility and Reducing Risk of Disease in Recipient Children.

Authors:  Ari J Silver; Jessica L Larson; Maxwell J Silver; Regine M Lim; Carlos Borroto; Brett Spurrier; Anne Morriss; Lee M Silver
Journal:  Genet Test Mol Biomarkers       Date:  2016-04-22

10.  Newborn Screening Quality Assurance Program for CFTR Mutation Detection and Gene Sequencing to Identify Cystic Fibrosis.

Authors:  Miyono M Hendrix; Stephanie L Foster; Suzanne K Cordovado
Journal:  J Inborn Errors Metab Screen       Date:  2016-08-01
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