Literature DB >> 21388110

Ab initio calculations of deuterium isotope effects on chemical shifts of salt-bridged lysines.

Saif Ullah1, Takayoshi Ishimoto, Mike P Williamson, Poul Erik Hansen.   

Abstract

Deuterium isotope effects measure the change in chemical shift on substitution of a proton by deuterium. They have been calculated by direct treatment of the H/D nuclear quantum effect using a multicomponent ab initio molecular orbital method based on a non-Born-Oppenheimer approximation. This method enables the determination of both the electronic and the protonic (deuteronic) wave functions simultaneously and can directly calculate the geometrical difference induced by H/D isotope effects. The calculations show that the one-bond deuterium isotope effects on (15)N nuclear shielding, (1)Δ(15)N(D), in ammonium and amines decrease as a counterion or water molecule moves closer to the nitrogen. (1)Δ(15)N(D) and (2)Δ(1)H(D) of the NH(3)(+) groups of lysine residues in the B1 domain of protein G have been calculated using truncated side chains and also determined experimentally by NMR. Comparisons show that the structures in solution are different from those in the crystal and that solvation plays an important role in weakening the hydrogen bonds.

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Year:  2011        PMID: 21388110     DOI: 10.1021/jp1111789

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  4 in total

1.  pH-dependent random coil (1)H, (13)C, and (15)N chemical shifts of the ionizable amino acids: a guide for protein pK a measurements.

Authors:  Gerald Platzer; Mark Okon; Lawrence P McIntosh
Journal:  J Biomol NMR       Date:  2014-09-20       Impact factor: 2.835

2.  The Structure of the "Vibration Hole" around an Isotopic Substitution-Implications for the Calculation of Nuclear Magnetic Resonance (NMR) Isotopic Shifts.

Authors:  Jürgen Gräfenstein
Journal:  Molecules       Date:  2020-06-24       Impact factor: 4.411

3.  Theoretical study of H/D isotope effects on nuclear magnetic shieldings using an ab initio multi-component molecular orbital method.

Authors:  Taro Udagawa; Takayoshi Ishimoto; Masanori Tachikawa
Journal:  Molecules       Date:  2013-05-07       Impact factor: 4.411

Review 4.  Isotope Effects on Chemical Shifts in the Study of Hydrogen Bonds in Small Molecules.

Authors:  Poul Erik Hansen
Journal:  Molecules       Date:  2022-04-08       Impact factor: 4.927

  4 in total

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