Literature DB >> 21386381

A critical assessment of theoretical methods for finding reaction pathways and transition states of surface processes.

Jiří Klimeš1, David R Bowler, Angelos Michaelides.   

Abstract

The performance of a variety of techniques for locating transition states on potential energy surfaces is evaluated within the density functional theory framework. Diffusion of a water molecule across NaCl(001) and HCl bond breaking on the same surface are treated as general test cases; the former is an example of a low barrier diffusion process and the latter an example of a relatively high barrier covalent bond rupture event. The methods considered include the nudged elastic band (NEB), Dewar, Healy and Stewart (DHS), dimer, constrained optimization (CO), activation-relaxation technique (ART) and one-side growing string (OGS) as well as novel combinations of the DHS with growing string (DHS + GS) and DHS plus climbing image (CI-DHS). A key conclusion to come from this study is that the NEB method is relatively fast, especially when just a single (climbing) image is used. Indeed, using more images represents an unnecessary computational burden for our set of processes. The dimer method exhibits variable performance; being poor for the water diffusion processes, which have small activation energies, but much more efficient for the HCl bond breaking process which has a higher barrier. When only a poor initial guess of the transition state geometry is available, the CI-DHS scheme is one of the most efficient techniques considered. And as a means to quickly establish an approximate minimum energy pathway the DHS + GS scheme offers some potential.

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Year:  2010        PMID: 21386381     DOI: 10.1088/0953-8984/22/7/074203

Source DB:  PubMed          Journal:  J Phys Condens Matter        ISSN: 0953-8984            Impact factor:   2.333


  5 in total

1.  Exciting H2 Molecules for Graphene Functionalization.

Authors:  Line Kyhl; Régis Bisson; Richard Balog; Michael N Groves; Esben Leonhard Kolsbjerg; Andrew Martin Cassidy; Jakob Holm Jørgensen; Susanne Halkjær; Jill A Miwa; Antonija Grubišić Čabo; Thierry Angot; Philip Hofmann; Mohammad Alif Arman; Samuli Urpelainen; Paolo Lacovig; Luca Bignardi; Hendrik Bluhm; Jan Knudsen; Bjørk Hammer; Liv Hornekaer
Journal:  ACS Nano       Date:  2018-01-05       Impact factor: 15.881

2.  Exploring dynamic interactions of single nanoparticles at interfaces for surface-confined electrochemical behavior and size measurement.

Authors:  Hui Ma; Jian-Fu Chen; Hai-Feng Wang; Pei-Jun Hu; Wei Ma; Yi-Tao Long
Journal:  Nat Commun       Date:  2020-05-08       Impact factor: 14.919

3.  Reply to the 'Comment on "Quantum interference effects in biphenyl dithiol for gas detection"' by A. Grigoriev, H. Jafri and K. Leifer, RSC Adv., 2020, 10, DOI: 10.1039/C9RA00451C.

Authors:  Jariyanee Prasongkit
Journal:  RSC Adv       Date:  2020-01-14       Impact factor: 3.361

4.  Surface Coverage as an Important Parameter for Predicting Selectivity Trends in Electrochemical CO2 Reduction.

Authors:  Andrew R T Morrison; Mahinder Ramdin; Leo J P van der Broeke; Wiebren de Jong; Thijs J H Vlugt; Ruud Kortlever
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2022-07-13       Impact factor: 4.177

5.  Origins of fast diffusion of water dimers on surfaces.

Authors:  Wei Fang; Ji Chen; Philipp Pedevilla; Xin-Zheng Li; Jeremy O Richardson; Angelos Michaelides
Journal:  Nat Commun       Date:  2020-04-03       Impact factor: 14.919

  5 in total

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