Literature DB >> 21386112

Five statistical questions about the tree of life.

David J Aldous1, Maxim A Krikun, Lea Popovic.   

Abstract

Stochastic modeling of phylogenies raises five questions that have received varying levels of attention from quantitatively inclined biologists. 1) How large do we expect (from the model) the ratio of maximum historical diversity to current diversity to be? 2) From a correct phylogeny of the extant species of a clade, what can we deduce about past speciation and extinction rates? 3) What proportion of extant species are in fact descendants of still-extant ancestral species, and how does this compare with predictions of models? 4) When one moves from trees on species to trees on sets of species (whether traditional higher order taxa or clades within PhyloCode), does one expect trees to become more unbalanced as a purely logical consequence of tree structure, without signifying any real biological phenomenon? 5) How do we expect that fluctuation rates for counts of higher order taxa should compare with fluctuation rates for number of species? We present a mathematician's view based on an oversimplified modeling framework in which all these questions can be studied coherently.

Mesh:

Year:  2011        PMID: 21386112     DOI: 10.1093/sysbio/syr008

Source DB:  PubMed          Journal:  Syst Biol        ISSN: 1063-5157            Impact factor:   15.683


  5 in total

1.  Swapping Birth and Death: Symmetries and Transformations in Phylodynamic Models.

Authors:  Tanja Stadler; Mike Steel
Journal:  Syst Biol       Date:  2019-09-01       Impact factor: 15.683

2.  Model for macroevolutionary dynamics.

Authors:  Yosef E Maruvka; Nadav M Shnerb; David A Kessler; Robert E Ricklefs
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-18       Impact factor: 11.205

3.  Pulled Diversification Rates, Lineages-Through-Time Plots, and Modern Macroevolutionary Modeling.

Authors:  Andrew J Helmstetter; Sylvain Glemin; Jos Käfer; Rosana Zenil-Ferguson; Hervé Sauquet; Hugo de Boer; Léo-Paul M J Dagallier; Nathan Mazet; Eliette L Reboud; Thomas L P Couvreur; Fabien L Condamine
Journal:  Syst Biol       Date:  2022-04-19       Impact factor: 9.160

4.  Estimating the duration of speciation from phylogenies.

Authors:  Rampal S Etienne; Hélène Morlon; Amaury Lambert
Journal:  Evolution       Date:  2014-06-03       Impact factor: 3.694

Review 5.  Phylogenetics and the human microbiome.

Authors:  Frederick A Matsen
Journal:  Syst Biol       Date:  2014-08-07       Impact factor: 15.683

  5 in total

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