Literature DB >> 21383068

An NK and T cell enhancer lies 280 kilobase pairs 3' to the gata3 structural gene.

Sakie Hosoya-Ohmura1, Yu-Hsuan Lin, Mary Herrmann, Takashi Kuroha, Arvind Rao, Takashi Moriguchi, Kim-Chew Lim, Tomonori Hosoya, James Douglas Engel.   

Abstract

Transcription factor GATA-3 is vital for multiple stages of T cell and natural killer (NK) cell development, and yet the factors that directly regulate Gata3 transcription during hematopoiesis are only marginally defined. Here, we show that neither of the Gata3 promoters, previously implicated in its tissue-specific regulation, is alone capable of directing Gata3 transcription in T lymphocytes. In contrast, by surveying large swaths of DNA surrounding the Gata3 locus, we located a cis element that can recapitulate aspects of the Gata3-dependent T cell regulatory program in vivo. This element, located 280 kbp 3' to the structural gene, directs both T cell- and NK cell-specific transcription in vivo but harbors no other tissue activity. This novel, distant element regulates multiple major developmental stages that require GATA-3 activity.

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Year:  2011        PMID: 21383068      PMCID: PMC3133233          DOI: 10.1128/MCB.05065-11

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  53 in total

1.  Definition of regulatory network elements for T cell development by perturbation analysis with PU.1 and GATA-3.

Authors:  Michele K Anderson; Gabriela Hernandez-Hoyos; Christopher J Dionne; Alexandra M Arias; Dan Chen; Ellen V Rothenberg
Journal:  Dev Biol       Date:  2002-06-01       Impact factor: 3.582

2.  Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.

Authors:  Y Okazaki; M Furuno; T Kasukawa; J Adachi; H Bono; S Kondo; I Nikaido; N Osato; R Saito; H Suzuki; I Yamanaka; H Kiyosawa; K Yagi; Y Tomaru; Y Hasegawa; A Nogami; C Schönbach; T Gojobori; R Baldarelli; D P Hill; C Bult; D A Hume; J Quackenbush; L M Schriml; A Kanapin; H Matsuda; S Batalov; K W Beisel; J A Blake; D Bradt; V Brusic; C Chothia; L E Corbani; S Cousins; E Dalla; T A Dragani; C F Fletcher; A Forrest; K S Frazer; T Gaasterland; M Gariboldi; C Gissi; A Godzik; J Gough; S Grimmond; S Gustincich; N Hirokawa; I J Jackson; E D Jarvis; A Kanai; H Kawaji; Y Kawasawa; R M Kedzierski; B L King; A Konagaya; I V Kurochkin; Y Lee; B Lenhard; P A Lyons; D R Maglott; L Maltais; L Marchionni; L McKenzie; H Miki; T Nagashima; K Numata; T Okido; W J Pavan; G Pertea; G Pesole; N Petrovsky; R Pillai; J U Pontius; D Qi; S Ramachandran; T Ravasi; J C Reed; D J Reed; J Reid; B Z Ring; M Ringwald; A Sandelin; C Schneider; C A M Semple; M Setou; K Shimada; R Sultana; Y Takenaka; M S Taylor; R D Teasdale; M Tomita; R Verardo; L Wagner; C Wahlestedt; Y Wang; Y Watanabe; C Wells; L G Wilming; A Wynshaw-Boris; M Yanagisawa; I Yang; L Yang; Z Yuan; M Zavolan; Y Zhu; A Zimmer; P Carninci; N Hayatsu; T Hirozane-Kishikawa; H Konno; M Nakamura; N Sakazume; K Sato; T Shiraki; K Waki; J Kawai; K Aizawa; T Arakawa; S Fukuda; A Hara; W Hashizume; K Imotani; Y Ishii; M Itoh; I Kagawa; A Miyazaki; K Sakai; D Sasaki; K Shibata; A Shinagawa; A Yasunishi; M Yoshino; R Waterston; E S Lander; J Rogers; E Birney; Y Hayashizaki
Journal:  Nature       Date:  2002-12-05       Impact factor: 49.962

3.  Critical roles for transcription factor GATA-3 in thymocyte development.

Authors:  Sung-Yun Pai; Morgan L Truitt; Chao-Nan Ting; Jeffrey M Leiden; Laurie H Glimcher; I-Cheng Ho
Journal:  Immunity       Date:  2003-12       Impact factor: 31.745

4.  GATA-3 deficiency abrogates the development and maintenance of T helper type 2 cells.

Authors:  Sung-Yun Pai; Morgan L Truitt; I-Cheng Ho
Journal:  Proc Natl Acad Sci U S A       Date:  2004-02-09       Impact factor: 11.205

5.  Identifying gene regulatory elements by genome-wide recovery of DNase hypersensitive sites.

Authors:  Gregory E Crawford; Ingeborg E Holt; James C Mullikin; Denise Tai; Robert Blakesley; Gerard Bouffard; Alice Young; Catherine Masiello; Eric D Green; Tyra G Wolfsberg; Francis S Collins
Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-19       Impact factor: 11.205

6.  GATA-3 promotes maturation, IFN-gamma production, and liver-specific homing of NK cells.

Authors:  Sandrine I Samson; Odile Richard; Manuela Tavian; Thomas Ranson; Christian A J Vosshenrich; Francesco Colucci; Jan Buer; Frank Grosveld; Isabelle Godin; James P Di Santo
Journal:  Immunity       Date:  2003-11       Impact factor: 31.745

7.  Activity and tissue-specific expression of the transcription factor NF-E1 multigene family.

Authors:  M Yamamoto; L J Ko; M W Leonard; H Beug; S H Orkin; J D Engel
Journal:  Genes Dev       Date:  1990-10       Impact factor: 11.361

8.  Murine and human T-lymphocyte GATA-3 factors mediate transcription through a cis-regulatory element within the human T-cell receptor delta gene enhancer.

Authors:  L J Ko; M Yamamoto; M W Leonard; K M George; P Ting; J D Engel
Journal:  Mol Cell Biol       Date:  1991-05       Impact factor: 4.272

9.  Conditional deletion of Gata3 shows its essential function in T(H)1-T(H)2 responses.

Authors:  Jinfang Zhu; Booki Min; Jane Hu-Li; Cynthia J Watson; Alex Grinberg; Qi Wang; Nigel Killeen; Joseph F Urban; Liying Guo; William E Paul
Journal:  Nat Immunol       Date:  2004-10-10       Impact factor: 25.606

10.  GATA-3: an unexpected regulator of cell lineage determination in skin.

Authors:  Charles K Kaufman; Ping Zhou; H Amalia Pasolli; Michael Rendl; Diana Bolotin; Kim-Chew Lim; Xing Dai; Maria-Luisa Alegre; Elaine Fuchs
Journal:  Genes Dev       Date:  2003-08-15       Impact factor: 11.361

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  30 in total

1.  NF-κB and BRG1 bind a distal regulatory element in the IL-3/GM-CSF locus.

Authors:  Andrea L Wurster; Patricia Precht; Michael J Pazin
Journal:  Mol Immunol       Date:  2011-08-09       Impact factor: 4.407

Review 2.  Developmental gene networks: a triathlon on the course to T cell identity.

Authors:  Mary A Yui; Ellen V Rothenberg
Journal:  Nat Rev Immunol       Date:  2014-08       Impact factor: 53.106

Review 3.  T helper 2 (Th2) cell differentiation, type 2 innate lymphoid cell (ILC2) development and regulation of interleukin-4 (IL-4) and IL-13 production.

Authors:  Jinfang Zhu
Journal:  Cytokine       Date:  2015-06-01       Impact factor: 3.861

4.  H3K4 tri-methylation provides an epigenetic signature of active enhancers.

Authors:  Aleksandra Pekowska; Touati Benoukraf; Joaquin Zacarias-Cabeza; Mohamed Belhocine; Frederic Koch; Hélène Holota; Jean Imbert; Jean-Christophe Andrau; Pierre Ferrier; Salvatore Spicuglia
Journal:  EMBO J       Date:  2011-08-16       Impact factor: 11.598

5.  Deconstructing development.

Authors:  Christelle Harly; E John Wherry; Avinash Bhandoola
Journal:  Nat Immunol       Date:  2013-06       Impact factor: 25.606

Review 6.  Transcriptional drivers of the T-cell lineage program.

Authors:  Ellen V Rothenberg
Journal:  Curr Opin Immunol       Date:  2012-01-19       Impact factor: 7.486

Review 7.  Absence of a simple code: how transcription factors read the genome.

Authors:  Matthew Slattery; Tianyin Zhou; Lin Yang; Ana Carolina Dantas Machado; Raluca Gordân; Remo Rohs
Journal:  Trends Biochem Sci       Date:  2014-08-14       Impact factor: 13.807

8.  CD8+ T Cells Utilize Highly Dynamic Enhancer Repertoires and Regulatory Circuitry in Response to Infections.

Authors:  Bing He; Shaojun Xing; Changya Chen; Peng Gao; Li Teng; Qiang Shan; Jodi A Gullicksrud; Matthew D Martin; Shuyang Yu; John T Harty; Vladimir P Badovinac; Kai Tan; Hai-Hui Xue
Journal:  Immunity       Date:  2016-12-13       Impact factor: 31.745

9.  Core transcriptional regulatory circuit controlled by the TAL1 complex in human T cell acute lymphoblastic leukemia.

Authors:  Takaomi Sanda; Lee N Lawton; M Inmaculada Barrasa; Zi Peng Fan; Holger Kohlhammer; Alejandro Gutierrez; Wenxue Ma; Jessica Tatarek; Yebin Ahn; Michelle A Kelliher; Catriona H M Jamieson; Louis M Staudt; Richard A Young; A Thomas Look
Journal:  Cancer Cell       Date:  2012-08-14       Impact factor: 31.743

10.  A far downstream enhancer for murine Bcl11b controls its T-cell specific expression.

Authors:  Long Li; Jingli A Zhang; Marei Dose; Hao Yuan Kueh; Ruzbeh Mosadeghi; Fotini Gounari; Ellen V Rothenberg
Journal:  Blood       Date:  2013-06-05       Impact factor: 22.113

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