Literature DB >> 21381437

Information metrics in genetic epidemiology.

David L Tritchler1, Lara Sucheston, Pritam Chanda, Murali Ramanathan.   

Abstract

Information-theoretic metrics have been proposed for studying gene-gene and gene-environment interactions in genetic epidemiology. Although these metrics have proven very promising, they are typically interpreted in the context of communications and information transmission, diminishing their tangibility for epidemiologists and statisticians. In this paper, we clarify the interpretation of information-theoretic metrics. In particular, we develop the methods so that their relation to the global properties of probability models is made clear and contrast them with log-linear models for multinomial data. Hopefully, a better understanding of their properties and probabilistic implications will promote their acceptance and correct usage in genetic epidemiology. Our novel development also suggests new approaches to model search and computation.

Mesh:

Year:  2011        PMID: 21381437      PMCID: PMC3058413          DOI: 10.2202/1544-6115.1569

Source DB:  PubMed          Journal:  Stat Appl Genet Mol Biol        ISSN: 1544-6115


  10 in total

1.  Reconstructability analysis as a tool for identifying gene-gene interactions in studies of human diseases.

Authors:  Stephen Shervais; Patricia L Kramer; Shawn K Westaway; Nancy J Cox; Martin Zwick
Journal:  Stat Appl Genet Mol Biol       Date:  2010-03-03

2.  A flexible computational framework for detecting, characterizing, and interpreting statistical patterns of epistasis in genetic studies of human disease susceptibility.

Authors:  Jason H Moore; Joshua C Gilbert; Chia-Ti Tsai; Fu-Tien Chiang; Todd Holden; Nate Barney; Bill C White
Journal:  J Theor Biol       Date:  2006-02-02       Impact factor: 2.691

3.  An entropy-based approach for testing genetic epistasis underlying complex diseases.

Authors:  Guolian Kang; Weihua Yue; Jifeng Zhang; Yuehua Cui; Yijun Zuo; Dai Zhang
Journal:  J Theor Biol       Date:  2007-10-06       Impact factor: 2.691

4.  Exploration of gene-gene interaction effects using entropy-based methods.

Authors:  Changzheng Dong; Xun Chu; Ying Wang; Yi Wang; Li Jin; Tieliu Shi; Wei Huang; Yixue Li
Journal:  Eur J Hum Genet       Date:  2007-10-31       Impact factor: 4.246

5.  AMBIENCE: a novel approach and efficient algorithm for identifying informative genetic and environmental associations with complex phenotypes.

Authors:  Pritam Chanda; Lara Sucheston; Aidong Zhang; Daniel Brazeau; Jo L Freudenheim; Christine Ambrosone; Murali Ramanathan
Journal:  Genetics       Date:  2008-09-09       Impact factor: 4.562

6.  Information-theoretic metrics for visualizing gene-environment interactions.

Authors:  Pritam Chanda; Aidong Zhang; Daniel Brazeau; Lara Sucheston; Jo L Freudenheim; Christine Ambrosone; Murali Ramanathan
Journal:  Am J Hum Genet       Date:  2007-10-03       Impact factor: 11.025

7.  Comparison of information-theoretic to statistical methods for gene-gene interactions in the presence of genetic heterogeneity.

Authors:  Lara Sucheston; Pritam Chanda; Aidong Zhang; David Tritchler; Murali Ramanathan
Journal:  BMC Genomics       Date:  2010-09-03       Impact factor: 3.969

Review 8.  Detecting gene-gene interactions that underlie human diseases.

Authors:  Heather J Cordell
Journal:  Nat Rev Genet       Date:  2009-06       Impact factor: 53.242

9.  Prediction and interaction in complex disease genetics: experience in type 1 diabetes.

Authors:  David G Clayton
Journal:  PLoS Genet       Date:  2009-07-03       Impact factor: 5.917

10.  Alternative contingency table measures improve the power and detection of multifactor dimensionality reduction.

Authors:  William S Bush; Todd L Edwards; Scott M Dudek; Brett A McKinney; Marylyn D Ritchie
Journal:  BMC Bioinformatics       Date:  2008-05-16       Impact factor: 3.169

  10 in total
  3 in total

1.  Entropy, complexity, and Markov diagrams for random walk cancer models.

Authors:  Paul K Newton; Jeremy Mason; Brian Hurt; Kelly Bethel; Lyudmila Bazhenova; Jorge Nieva; Peter Kuhn
Journal:  Sci Rep       Date:  2014-12-19       Impact factor: 4.379

Review 2.  Transferring entropy to the realm of GxG interactions.

Authors:  Paola G Ferrario; Inke R König
Journal:  Brief Bioinform       Date:  2018-01-01       Impact factor: 11.622

3.  Information Theory in Computational Biology: Where We Stand Today.

Authors:  Pritam Chanda; Eduardo Costa; Jie Hu; Shravan Sukumar; John Van Hemert; Rasna Walia
Journal:  Entropy (Basel)       Date:  2020-06-06       Impact factor: 2.524

  3 in total

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